Gene detail

Detail information of GWHGAAZE030278

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008382511.1	0	PREDICTED: LOW QUALITY PROTEIN: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Malus domestica]
COG	YP_007567780.1	2E-25	RalF protein, translocated into host cells by the Dot/Icm system
Swissprot	tr\|F4JSZ5\|BIG1_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 1
trEMBL	tr\|F6I0P9\|F6I0P9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60515.1}
TAIR10	AT4G38200.1	0	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40906754	40916145	+
GWHAAZE00000009	mRNA	40906754	40916145	+
GWHAAZE00000009	exon	40906754	40907123	+
GWHAAZE00000009	exon	40908818	40909010	+
GWHAAZE00000009	exon	40909504	40910251	+
GWHAAZE00000009	exon	40910974	40911263	+
GWHAAZE00000009	exon	40911640	40911913	+
GWHAAZE00000009	exon	40912107	40912600	+
GWHAAZE00000009	exon	40913634	40913955	+
GWHAAZE00000009	exon	40914074	40914434	+
GWHAAZE00000009	exon	40914563	40915245	+
GWHAAZE00000009	exon	40915549	40916145	+
GWHAAZE00000009	CDS	40906754	40907123	+
GWHAAZE00000009	CDS	40908818	40909010	+
GWHAAZE00000009	CDS	40909504	40910251	+
GWHAAZE00000009	CDS	40910974	40911263	+
GWHAAZE00000009	CDS	40911640	40911913	+
GWHAAZE00000009	CDS	40912107	40912600	+
GWHAAZE00000009	CDS	40913634	40913955	+
GWHAAZE00000009	CDS	40914074	40914434	+
GWHAAZE00000009	CDS	40914563	40915245	+
GWHAAZE00000009	CDS	40915549	40916145	+

Transcript Sequence
>GWHTAAZE030312 ATGGGGGTGAGGTTTCGTACGGTTTCCGCTGCTGAGCTGTTGGAGTTTACTGATAGGAGTTTGAATGAAGGGAATTCGATACATGTTGCTCAGAAGTTTATTATTGAGGTTGTGGAGGATTCGAAGCAATCGTTTGGATTGCAGAATGGGGACAAAATAGAGAAGAAGCGTGATGGGATTGGTGGAGAGGAGGAGGGGGTTGATTTGAGTGGTTATATTAATAAGATTAAGGAGGATGGTTTTATGTTGTTCAAGAATTTGTGCAAATTATCGATGAAGTTCACCTCACAGCAGCATAAAGATGATCAAATTCTCTTGCGGGGAAAGACATTGTCCTTGGAGCTCCTAAAAGTGATCATGGACAACGGAGGGTTGAAATCAGAAATTGGAATCTTTTTCCCCATGCTCATCCTCCGTGTTCTTGAGAATGTGCTTCAGCCCAGTTTCTTACAGAAGATGACCGTCCTCCATCTATTGGAGAGGATCTCTCGGGATTCACAGATTATCATTGATATTTTTGTCAACTATGACTGCGATGTGGATTCTCCAAATATCTTTGAAAGTTGGGCATTGCGTTTATTCAATTGTATTAAAACCCTCTTAATTCCATCAGATATATGCAGGACCGTCAATGGACTTCACAAGACTGCTTTAGGTCCACCTCCAGGTTCCCCAACCACTTTGTCTCCTGTCCAAGATCTTTCATTTCGGCTAGAATCAGTGAAGTGCTTGGTTAGAATCATCCAGTCAATGGGAGCTTGGATAGACCAACAGCTCAGAATGGGCGATTTTTTTGCCCCAAATACCTCTGACAATGAGAATTCAATAGTGTCCCATGCAAACCTACACAGTGATGAAGTCAATCCTCCCAACTTTGAGCTGCCCTCAGAAGCAATTTCACTGTTTAATCAAAAACCTTCCAAGGGCATTGACTATTTAACAAGCAGCAAAAAAATTAGTGATACTCCGGAAGCAGTGGCATCCTTTTTGAAGAACACTGCTGGCCTGAACGGAAGTATGATTGGTGACTATTTGGGTGAAACTGAGGGGTTTCCTTTGAAAGTTATGCATGCTTATGTTGATTCCTTCAACTTTGAAGAAATGGATGTTGGAGAGGCAATTAGGGTTTTGCTAAAGGGCTTCAGATTACCTGGAGAGGCACAAAAGATTGACCACATAATGGAAAAATTTGCCGAGCGGTATTGTAAATGCAATCCCAATTCATTTAGAAGTGCAGATACTGCTTATGCCCTTGCTTATTCAGTGATAGTGCTCAACACCGATGCTCATAATAACATGGTAAAAGATAAGATGACGAAGGCTGATTTCATCCGGAATAACCAAGGGATCGATAATGGAAAGGACTTACCTGAAGAGTGTCTGGGTGCCCTCTATGATGAAGTTGTACAGAATGAGATTAAGATGAAAGCTGATGCTTCTGTGCCACAAAGCAAGCAGTGGAACAGCATCAATAAACTATTGGGCTTGGAAGGTATTCTGAATCTAGTGAAGAAGCAGTCACAAGCACAACGTCTAGGTGCAAATGGAGATCTTATAAAGCACATCCAAAAGCAGTTCAAGTCAAAATCCGGAAATTCGGAGTCTGTTTATGTCACTGTTGCAGATGCAACAATGTTGAGATTTATGGTTGAGGTGTGCTGGGCCCCGATGCTAGCTGCATTCAGTGTAACTCTGGACAAGAGTGTTGACAAGGCAGCTACTTCTCAATGCTTACAGGGTTTTCGTCATGCCGTGCATGTTACTGCAGTGACTGGTATGCAGACCCAGAGAGACGCTTTTGTTACTACTGTTGCCAAGTTTACTTACCTCCATTGCGCTGCAGATATGAAGCAAAAAAATGTTGACACTGTCAAGGCAATAATATCAATTGCCGTTGAAGATGGGAATTATCTTGAGGAAGCTTGGGAACATATATTAACATGTCTCTCTCGATTTGAGCATCTGCAACTTTTGGGAGAGGGTGATGCATCATTTTTTACTGCTTCAAACACCGAAACTGAAGAGAAAACACTGAAGACTACTGGCTTAACATCCTTAAAGAAAAAAGGAACTCTACAGAATCCTTCAGTGATGGCTGTTATGCGAGGGGGTTCATATGACAGCACTACCCATGGAGTTAATACCTCAGGGCTGGTAAAGCAAGAACAAATTAGTAACTTCATTTCAAACCTGAATCTTCTTGATCAGATAGGGAATTTTGAGTTAAACCACATATTTGGTCATAGCCAGAGGTTAAATAGCGTGGCAATAGTTGCTTTTGTTAAAGCCCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCCCCTACAGATCCTCGTGTATTCAGTCTCACGAAATTAGTAGAAGTTGCACATTACAATATGAACCGCATCAGATTAGTGTGGTCCCATTTATGGAGTGTTCTCTCAGATTTCCTTGTGTCTGTTGGTTTGTCAGAAAATCTCTCTGTTGCGATCTTTGTGATGGATTCATTGCGGCAACTCGCTATGAAATTCTTAGAGCGAGAAGAGCTGACAAATTACAATTTTCAGAAAGAATTTTTGAGACCATTTGTGGTTGTCATGCAGAGTAGCACCTCTGCCGAAATCCGGGAATTAATAGTTCGCTGTATTTCACAAATGGTCCTTAGCCATGTAAACAATGTAAAATCTGGCTGGGAGAGCGTTTTTATGGTTTTTAGAGCTGCGGCAGCTGATGAAAGGAAGAACATAGCCTTGCTAGCTTTCGAAAACATGGAAAAATTAGTACGAGAGTATTTTCCTTACATTACTGAGACTGAATCTGTGTCTTTTACGGATTGTATGAATTGCCTCATAACCTTCACAAACAGTAAATTTGGCAATGATGTCTGCCTCAGAGCCATTTCTTTTCTACAATTCTGTGCTGTCAAACTTGCGGATGAGGGACTTATTTGCAATGATACACATAAAGATGATGGTTCATCTATTCAACTAGTAAATGACTCTGCTTCAAATGGACAAACTTTTACGTATAAAGATGACCACGTATCCTTTTGGATGCCTTTGCTTACTGGGTTATCAAGACTGACATCAGACTCTAGATCAGCTATCAGAAAAAGTGCTTTGGGAGTGCTCTTCAACATCTTGAAGGATCATGGTCATCTGTTTTCTCGCTCATTCTGGGCGAGTGTTTTCAACTCTGTAATTTTTCCAGTATTCAAATCTCCGAGTATCAAGAAAGAAACTCGATCTACCGATGCTCATTCTCCATTAGGTTCCATATCTCCTCATCCCGATGGACGTACATGGGACCCTGAAACTTCTACAGTGGCAACTCAATGTCTAGTGGATCTATTTGTCACTTTTTATAATGTTATGTGGTCTCAATTACCCGAAGTGATGTCGATTTTAGCGGGGTTTTTGAAAAGTCATGGTCAAGGTTCTGCAAGCATTGGGGTAGCGGCAGTGATGCGCTTGGCAGGTAACTTGGGAGGCAGGCTATCTACAGATGAATGGGCAGATATCTTTTCTGCTTTGAAAGAGGTAGCTGCTTCTACTGTGCCAGGATTCTTAAAGCTTGTGGGAACCATGGACAACATTGAGATTCCCAATGTTTTTCAATCCTACAATGTTTCTGAAATTTTGTCTGCAAATGGATTTACCCATGATGATTCTGAGGAGGATAACTTGCACACTGCAGCACATATTAGTTCAAGGTTGAAGAGTCATATAGCCTCCCAACTACTCATTATTCAGGTGATAACTGATCTATGCAAAATGCACCCACAATCACTCTCTGCCAGCAACATCGTGATCCTCGTCGAAATCTTCTCATCTATTGCATCACATGCCCACCAATTAAACTCCGAAACAAACATACGGCCGAAGCTGCACAAAGCGTGCTTCACCCTCGATATTTCCGAACCACCCCTAGTCCACTTCGAGAATGAATCTTACCGAAATCACCTTAACTTTTTGCTCAATTTACTAATCCACCATCCTTCTTTATCCGACGAAAGCAACATCGAGCCTCAGCTCATAGCTGTATCCAAACAAGCTCTAAATATATACCTGGACTATGCCAGGTCCCACTCTGTTAAAAGACCCGAGATTCGTTGGATTCTGCCTCTGGGTTCGGCCAAAAAGGAGGAGTTGGGGGCGAGGACCTCTTTAGTCGTGTCGGCATTGCGTGTTTTGAGTTGTTTGGAGAGACATCGATTGAAAAGGTACGTTTCGTATTTGTTTCCTCTGTTCATTGATCTTATGGGGAGCGAGCATAGCTCGAGTGAAATTCAGATTTCTCTAAGGGACATGTTGGAGTCGTGTATAGGCCCCATAGTAATGGAATTGTGA

Network for GWHGAAZE030278

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	125	185	1.40E-12
PF01369.21	Sec7	296	473	1.80E-66
PF09324.11	DUF1981	837	919	2.40E-28
PF16206.6	Mon2_C	1010	1067	3.30E-06

Protein Sequence

>GWHPAAZE030296
MGVRFRTVSAAELLEFTDRSLNEGNSIHVAQKFIIEVVEDSKQSFGLQNGDKIEKKRDGIGGEEEGVDLSGYINKIKEDGFMLFKNLCKLSMKFTSQQHKDDQILLRGKTLSLELLKVIMDNGGLKSEIGIFFPMLILRVLENVLQPSFLQKMTVLHLLERISRDSQIIIDIFVNYDCDVDSPNIFESWALRLFNCIKTLLIPSDICRTVNGLHKTALGPPPGSPTTLSPVQDLSFRLESVKCLVRIIQSMGAWIDQQLRMGDFFAPNTSDNENSIVSHANLHSDEVNPPNFELPSEAISLFNQKPSKGIDYLTSSKKISDTPEAVASFLKNTAGLNGSMIGDYLGETEGFPLKVMHAYVDSFNFEEMDVGEAIRVLLKGFRLPGEAQKIDHIMEKFAERYCKCNPNSFRSADTAYALAYSVIVLNTDAHNNMVKDKMTKADFIRNNQGIDNGKDLPEECLGALYDEVVQNEIKMKADASVPQSKQWNSINKLLGLEGILNLVKKQSQAQRLGANGDLIKHIQKQFKSKSGNSESVYVTVADATMLRFMVEVCWAPMLAAFSVTLDKSVDKAATSQCLQGFRHAVHVTAVTGMQTQRDAFVTTVAKFTYLHCAADMKQKNVDTVKAIISIAVEDGNYLEEAWEHILTCLSRFEHLQLLGEGDASFFTASNTETEEKTLKTTGLTSLKKKGTLQNPSVMAVMRGGSYDSTTHGVNTSGLVKQEQISNFISNLNLLDQIGNFELNHIFGHSQRLNSVAIVAFVKALCKVSMSELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSHLWSVLSDFLVSVGLSENLSVAIFVMDSLRQLAMKFLEREELTNYNFQKEFLRPFVVVMQSSTSAEIRELIVRCISQMVLSHVNNVKSGWESVFMVFRAAAADERKNIALLAFENMEKLVREYFPYITETESVSFTDCMNCLITFTNSKFGNDVCLRAISFLQFCAVKLADEGLICNDTHKDDGSSIQLVNDSASNGQTFTYKDDHVSFWMPLLTGLSRLTSDSRSAIRKSALGVLFNILKDHGHLFSRSFWASVFNSVIFPVFKSPSIKKETRSTDAHSPLGSISPHPDGRTWDPETSTVATQCLVDLFVTFYNVMWSQLPEVMSILAGFLKSHGQGSASIGVAAVMRLAGNLGGRLSTDEWADIFSALKEVAASTVPGFLKLVGTMDNIEIPNVFQSYNVSEILSANGFTHDDSEEDNLHTAAHISSRLKSHIASQLLIIQVITDLCKMHPQSLSASNIVILVEIFSSIASHAHQLNSETNIRPKLHKACFTLDISEPPLVHFENESYRNHLNFLLNLLIHHPSLSDESNIEPQLIAVSKQALNIYLDYARSHSVKRPEIRWILPLGSAKKEELGARTSLVVSALRVLSCLERHRLKRYVSYLFPLFIDLMGSEHSSSEIQISLRDMLESCIGPIVMEL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.522
	SRR3591706	second leaf	0.611
	SRR3591707	mature leaf	0.185
	SRR3591708	Shoot apex	0.366
	SRR3591709	Stem	1.346
	SRR3591710	White floral bud	2.717
	SRR3591711	White flower	2.514
	SRR3591712	Green floral bud	3.213
	SRR3591713	Yellow flower	1.401
SRP173429	SRR8316895	Juvenile bud stage	0.349
	SRR8316896	Juvenile bud stage	1.186
	SRR8316897	Juvenile bud stage	1.175
	SRR8316894	Third green stage	0.923
	SRR8316900	Third green stage	2.603
	SRR8316901	Third green stage	2.181
	SRR8316898	Complete white stage	0.181
	SRR8316899	Complete white stage	0.178
	SRR8316903	Complete white stage	0.343
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.180
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.110
	SRR8316907	Gold flowering stage	0.241
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.663
	SRR6706287	Light intensity 50%	0.610
	SRR6706288	Light intensity 20%	0.608
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.834
	CNS0095593	Slightly white alabastrum(diploid) 2	1.065
	CNS0095594	Slightly white alabastrum(diploid) 3	1.759
	CNS0095595	Whole white alabastrum(diploid) 2	2.073
	CNS0095596	Whole white alabastrum(diploid) 3	2.813
	CNS0095597	Whole white alabastrum(diploid) 4	1.846
	CNS0095598	Silvery flower (diploied) 1	0.152
	CNS0095599	Silvery flower (diploied) 2	0.406
	CNS0095600	Silvery flower (diploied) 3	0.435
	CNS0095601	Golden flower (diploid) 1	0.392
	CNS0095602	Golden flower (diploid) 2	0.313
	CNS0095603	Golden flower (diploid) 3	0.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.182
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.217
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.978
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.888
	CNS0095610	Silvery flower (tetraploid) 1	0.661
	CNS0095611	Silvery flower (tetraploid) 2	0.330
	CNS0095612	Silvery flower (tetraploid) 3	0.458
	CNS0095613	Golden flower (tetraploid) 1	0.177
	CNS0095614	Golden flower (tetraploid) 2	0.729
	CNS0095615	Golden flower (tetraploid) 3	0.406
CRA001975	CRR073297	Stem 1	0.389
	CRR073298	Stem 2	0.467
	CRR073299	Stem 3	0.196
	CRR073300	Leaf 1	0.986
	CRR073301	Leaf 2	0.864
	CRR073302	Leaf 3	0.793
	CRR073303	Juvenile bud 1	1.273
	CRR073304	Juvenile bud 2	0.434
	CRR073305	Juvenile bud 3	0.151
	CRR073306	Third green 1	0.294
	CRR073307	Third green 2	0.246
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	0.092
	CRR073310	Second white 2	0.111
	CRR073311	Second white 3	0.070
	CRR073312	Silver flowering 1	0.149
	CRR073313	Silver flowering 2	0.224
	CRR073314	Silver flowering 3	0.168
	CRR073315	Gold flowering 1	0.015
	CRR073316	Gold flowering 2	0.001
	CRR073317	Gold flowering 3	0.015
	CRR073318	Tawny withering 1	0.261
	CRR073319	Tawny withering 2	0.154
	CRR073320	Tawny withering 3	0.211