Detail information of GWHGAAZE030280


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043118.18.4931E-122FAR1-related sequence 5 [Theobroma cacao]
Swissprottr|Q9SZL8|FRS5_ARATH5E-94Protein FAR1-RELATED SEQUENCE 5
trEMBLtr|A0A061E1M0|A0A061E1M0_THECC3E-122FAR1-related sequence 5 {ECO:0000313|EMBL:EOX98949.1}
TAIR10AT4G38180.12E-80FAR1-related sequence 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4094268040944455+
GWHAAZE00000009mRNA4094268040944455+
GWHAAZE00000009exon4094268040943274+
GWHAAZE00000009exon4094421440944455+
GWHAAZE00000009five_prime_UTR4094268040942758+
GWHAAZE00000009CDS4094275940943274+
GWHAAZE00000009CDS4094421440944387+
GWHAAZE00000009three_prime_UTR4094438840944455+
Transcript Sequence

Network for GWHGAAZE030280

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0024


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04434.18SWIM14606.80E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.215
SRR3591706second leaf6.024
SRR3591707mature leaf5.083
SRR3591708Shoot apex9.342
SRR3591709Stem8.551
SRR3591710White floral bud6.745
SRR3591711White flower8.003
SRR3591712Green floral bud7.093
SRR3591713Yellow flower8.981
SRP173429 SRR8316895Juvenile bud stage 5.320
SRR8316896Juvenile bud stage 6.539
SRR8316897Juvenile bud stage 2.345
SRR8316894Third green stage 2.421
SRR8316900Third green stage 7.783
SRR8316901Third green stage 8.862
SRR8316898Complete white stage 1.368
SRR8316899Complete white stage 10.012
SRR8316903Complete white stage 5.725
SRR8316902Silver flowering stage4.305
SRR8316904Silver flowering stage5.299
SRR8316905Silver flowering stage2.370
SRR8316906Gold flowering stage 6.889
SRR8316907Gold flowering stage 6.307
SRR8316908Gold flowering stage 6.222
SRP132670SRR6706286Control2.053
SRR6706287Light intensity 50%3.034
SRR6706288Light intensity 20%1.917
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.944
CNS0095593Slightly white alabastrum(diploid) 28.558
CNS0095594Slightly white alabastrum(diploid) 37.395
CNS0095595Whole white alabastrum(diploid) 25.532
CNS0095596Whole white alabastrum(diploid) 36.749
CNS0095597Whole white alabastrum(diploid) 45.989
CNS0095598Silvery flower (diploied) 111.400
CNS0095599Silvery flower (diploied) 28.763
CNS0095600Silvery flower (diploied) 310.003
CNS0095601Golden flower (diploid) 110.173
CNS0095602Golden flower (diploid) 210.212
CNS0095603Golden flower (diploid) 310.577
CNS0095604Slightly white alabastrum(tetraploid) 18.837
CNS0095605Slightly white alabastrum(tetraploid) 29.163
CNS0095606Slightly white alabastrum(tetraploid) 312.284
CNS0095607Whole white alabastrum(tetraploid) 14.572
CNS0095608Whole white alabastrum(tetraploid) 23.728
CNS0095609Whole white alabastrum(tetraploid) 36.976
CNS0095610Silvery flower (tetraploid) 111.675
CNS0095611Silvery flower (tetraploid) 213.043
CNS0095612Silvery flower (tetraploid) 37.350
CNS0095613Golden flower (tetraploid) 110.452
CNS0095614Golden flower (tetraploid) 212.347
CNS0095615Golden flower (tetraploid) 38.302
CRA001975CRR073297Stem 14.290
CRR073298Stem 24.790
CRR073299Stem 34.259
CRR073300Leaf 13.400
CRR073301Leaf 23.796
CRR073302Leaf 32.472
CRR073303Juvenile bud 12.989
CRR073304Juvenile bud 22.644
CRR073305Juvenile bud 32.688
CRR073306Third green 10.874
CRR073307Third green 21.615
CRR073308Third green 31.187
CRR073309Second white 10.953
CRR073310Second white 22.290
CRR073311Second white 31.984
CRR073312Silver flowering 11.678
CRR073313Silver flowering 22.276
CRR073314Silver flowering 32.798
CRR073315Gold flowering 12.162
CRR073316Gold flowering 25.059
CRR073317Gold flowering 32.014
CRR073318Tawny withering 13.685
CRR073319Tawny withering 22.869
CRR073320Tawny withering 35.424