Gene detail

Detail information of GWHGAAZE030282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010028889.1	0	PREDICTED: histone deacetylase 19 isoform X1 [Eucalyptus grandis]
COG	YP_008089142.1	5E-67	Deacetylases, including yeast histone deacetylase and acetoin utilization protein
Swissprot	tr\|O22446\|HDA19_ARATH	0	Histone deacetylase 19
trEMBL	tr\|A0A059APE9\|A0A059APE9_EUCGR	0	Histone deacetylase {ECO:0000256\|PIRNR:PIRNR037913}
TAIR10	AT4G38130.1	0	histone deacetylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40973137	40975483	+
GWHAAZE00000009	mRNA	40973137	40975483	+
GWHAAZE00000009	exon	40973137	40973664	+
GWHAAZE00000009	exon	40974194	40974652	+
GWHAAZE00000009	exon	40974728	40974957	+
GWHAAZE00000009	exon	40975441	40975483	+
GWHAAZE00000009	CDS	40973137	40973664	+
GWHAAZE00000009	CDS	40974194	40974652	+
GWHAAZE00000009	CDS	40974728	40974957	+
GWHAAZE00000009	CDS	40975441	40975483	+

Transcript Sequence
>GWHTAAZE030316 ATGGACGCGGGAGGCAATTCTCTTCCTTCTGGATCAGATGGTGTGAAGAGAAAAGTGTCTTATTTTTATGATCCTGAGGTTGGCAATTACTACTACGGGCAGGGTCACCCTATGAAACCTCACAGAATTCGCATGACACATGCCCTCCTTGCCCATTACGGCTTGCTTCAGCATATGCAAGTCCTGAAGCCCTTTCCTGCTCGAGATAGAGATCTATGCCGTTTCCATGCCGATGATTATGTATCATTTCTAAGAAGTATAACTCCCGAAACACAGCAGGATCAGCTAAGGCAACTGAAGCGATTCAACGTTGGTGAAGATTGCCCTGTGTTTGATGGTCTCTACTCTTTCTGTCAAACTTATGCCGGTGGCTCAGTTGGCGGTGCCGTTAAACTGAATCACAACCTCTGTGATATTGCTATTAACTGGGCTGGAGGATTACACCATGCTAAGAAGTGCGAGGCTTCTGGGTTTTGCTATGTAAATGATATTGTGCTCGCCATCTTGGAGCTTCTTAAGCAGCATGAGCGTGTTTTGTACGTGGACATTGATATTCATCATGGAGACGGTGTAGAGGAGGCTTTTTACACAACTGACAGGGTCATGACTGTTTCTTTCCATAAATTTGGAGATTACTTTCCTGGTACTGGGGATATACGTGACATAGGATACGGCAAAGGGAAATACTATTCCCTTAATGTGCCTTTGGATGATGGGATAGATGATGAGAGCTACCACCACTTGTTCAAGCCAATTATTGGAAAAGTAATGGAAGTTTTTAGGCCCGGCGCTGTGGTTCTCCAGTGTGGTGCCGACTCCTTATCTGGGGACAGGTTAGGATGTTTCAATCTTTCAATAAAGGGACATGCAGAGTGTGTTAGGTATATGAGATCCTTCAATGTGCCATTGTTGCTGCTGGGTGGTGGTGGATATACTATTAGGAATGTGGCACGTTGCTGGTGTTATGAGGTACAATTTCTATACCAGACAGGGGTTGCACTTGGATTGGAAGTAGAGGACAAGATGCCACAACATGAGTATTACGAGTATTTTGGTCCAGACTATATTCTACACGTTGCCCCAAGTAACATGGAGAATAAGAATTCTCGCCAATTACTGGAAGAAATAAAATCTCAGCTTCTTGATGATCTCTCAAAGCTTCGTCATGCTCCCAGTGTTCAATTTCAGGAAAGGCCACCAGATACTGAGCTCCTGAGGTGTTTCAATATTTTGAATTACAAGCTGGTTGTGTTGATTTAG

Network for GWHGAAZE030282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00850.20	Hist_deacetyl	36	325	1.10E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06067	HDAC1_2	Notch signaling pathway	map04330
		Cell cycle	map04110
		Thyroid hormone signaling pathway	map04919
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0016575	biological_process	histone deacetylation
GO:0004407	molecular_function	histone deacetylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.312
	SRR3591706	second leaf	18.331
	SRR3591707	mature leaf	11.273
	SRR3591708	Shoot apex	31.065
	SRR3591709	Stem	27.023
	SRR3591710	White floral bud	36.495
	SRR3591711	White flower	38.661
	SRR3591712	Green floral bud	37.094
	SRR3591713	Yellow flower	34.846
SRP173429	SRR8316895	Juvenile bud stage	23.648
	SRR8316896	Juvenile bud stage	40.760
	SRR8316897	Juvenile bud stage	19.479
	SRR8316894	Third green stage	16.449
	SRR8316900	Third green stage	51.958
	SRR8316901	Third green stage	48.636
	SRR8316898	Complete white stage	16.008
	SRR8316899	Complete white stage	49.562
	SRR8316903	Complete white stage	26.208
	SRR8316902	Silver flowering stage	14.650
	SRR8316904	Silver flowering stage	20.211
	SRR8316905	Silver flowering stage	12.390
	SRR8316906	Gold flowering stage	37.879
	SRR8316907	Gold flowering stage	46.336
	SRR8316908	Gold flowering stage	37.359
SRP132670	SRR6706286	Control	51.483
	SRR6706287	Light intensity 50%	52.585
	SRR6706288	Light intensity 20%	57.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.869
	CNS0095593	Slightly white alabastrum(diploid) 2	26.564
	CNS0095594	Slightly white alabastrum(diploid) 3	29.293
	CNS0095595	Whole white alabastrum(diploid) 2	28.583
	CNS0095596	Whole white alabastrum(diploid) 3	34.772
	CNS0095597	Whole white alabastrum(diploid) 4	31.105
	CNS0095598	Silvery flower (diploied) 1	29.283
	CNS0095599	Silvery flower (diploied) 2	33.758
	CNS0095600	Silvery flower (diploied) 3	42.345
	CNS0095601	Golden flower (diploid) 1	26.813
	CNS0095602	Golden flower (diploid) 2	37.367
	CNS0095603	Golden flower (diploid) 3	37.309
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.941
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.869
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.712
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.337
	CNS0095610	Silvery flower (tetraploid) 1	37.872
	CNS0095611	Silvery flower (tetraploid) 2	40.704
	CNS0095612	Silvery flower (tetraploid) 3	39.248
	CNS0095613	Golden flower (tetraploid) 1	24.590
	CNS0095614	Golden flower (tetraploid) 2	34.799
	CNS0095615	Golden flower (tetraploid) 3	38.650
CRA001975	CRR073297	Stem 1	30.686
	CRR073298	Stem 2	30.410
	CRR073299	Stem 3	26.970
	CRR073300	Leaf 1	32.300
	CRR073301	Leaf 2	30.839
	CRR073302	Leaf 3	30.751
	CRR073303	Juvenile bud 1	31.323
	CRR073304	Juvenile bud 2	27.195
	CRR073305	Juvenile bud 3	33.723
	CRR073306	Third green 1	11.824
	CRR073307	Third green 2	14.268
	CRR073308	Third green 3	16.065
	CRR073309	Second white 1	17.742
	CRR073310	Second white 2	17.383
	CRR073311	Second white 3	17.285
	CRR073312	Silver flowering 1	12.208
	CRR073313	Silver flowering 2	11.960
	CRR073314	Silver flowering 3	14.929
	CRR073315	Gold flowering 1	11.243
	CRR073316	Gold flowering 2	12.643
	CRR073317	Gold flowering 3	10.931
	CRR073318	Tawny withering 1	20.927
	CRR073319	Tawny withering 2	16.202
	CRR073320	Tawny withering 3	19.365