Gene detail

Detail information of GWHGAAZE030289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010255536.1	0	PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera]
COG	YP_007146920.1	1E-37	WD40 repeat-containing protein
Swissprot	tr\|Q8W117\|SMU1_ARATH	0	Suppressor of mec-8 and unc-52 protein homolog 1
trEMBL	tr\|D7SHM1\|D7SHM1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI14981.3}
TAIR10	AT1G73720.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41071684	41079612	+
GWHAAZE00000009	mRNA	41071684	41079612	+
GWHAAZE00000009	exon	41071684	41071712	+
GWHAAZE00000009	exon	41072830	41073040	+
GWHAAZE00000009	exon	41073574	41073726	+
GWHAAZE00000009	exon	41073992	41074040	+
GWHAAZE00000009	exon	41075127	41075210	+
GWHAAZE00000009	exon	41075597	41075700	+
GWHAAZE00000009	exon	41076770	41076856	+
GWHAAZE00000009	exon	41076943	41076996	+
GWHAAZE00000009	exon	41077403	41077498	+
GWHAAZE00000009	exon	41078199	41078326	+
GWHAAZE00000009	exon	41078488	41078614	+
GWHAAZE00000009	exon	41078697	41078756	+
GWHAAZE00000009	exon	41078869	41078976	+
GWHAAZE00000009	exon	41079066	41079166	+
GWHAAZE00000009	exon	41079336	41079387	+
GWHAAZE00000009	exon	41079514	41079612	+
GWHAAZE00000009	CDS	41071684	41071712	+
GWHAAZE00000009	CDS	41072830	41073040	+
GWHAAZE00000009	CDS	41073574	41073726	+
GWHAAZE00000009	CDS	41073992	41074040	+
GWHAAZE00000009	CDS	41075127	41075210	+
GWHAAZE00000009	CDS	41075597	41075700	+
GWHAAZE00000009	CDS	41076770	41076856	+
GWHAAZE00000009	CDS	41076943	41076996	+
GWHAAZE00000009	CDS	41077403	41077498	+
GWHAAZE00000009	CDS	41078199	41078326	+
GWHAAZE00000009	CDS	41078488	41078614	+
GWHAAZE00000009	CDS	41078697	41078756	+
GWHAAZE00000009	CDS	41078869	41078976	+
GWHAAZE00000009	CDS	41079066	41079166	+
GWHAAZE00000009	CDS	41079336	41079387	+
GWHAAZE00000009	CDS	41079514	41079612	+

Transcript Sequence
>GWHTAAZE030323 ATGTCTACCCTAGAAATCGAAGCTCGAGATGTGATTAAGATAGTTCTTCAGTTTTGCAAAGAAAATTCTTTGCATCAAACTTTCCAGACATTACAAAGTGAGTGCCAAGTGTCACTGAATACGGTCGACAGCCTTGAAACATTTGTTGCAGATATTAATAGTGGAAGGTGGGATTCAATATTGCCCCAAGTTGCACAACTTAAGCTTCCTAGGAAGACACTAGAGGATTTGTATGAGCAGATTGTTTTGGAAATGATTGAACTTCGAGAATTGGACACTGCACGGGCTATACTAAGGCAAACCCAGGCAATGGGCGTAATGAAACAGGAGCAACCTGAAAGATACTTGCGACTTGAGCATCTTCTAGTTCGAACTTATTTTGATCCACATGAGGCTTATCAAGATTCGACAAAAGAGAAACGACGCTCTCAAATTGCCCAAGCTGTTGCTGCGGAAGTTTCTGTGGTTCCACCATCACGTCTAATGGCTCTAATTGGTCAGGCGCTGAAGTGGCAGCAGCACCAAGGGTTACTTCCTCCTGGAACACAGTTTGATTTGTTCCGAGGAACAGCTGCTATGAAACAAGATGTAGATGATATGTATCCAACCACTCTCGGGCATACCATCAAGTTTGGGAAAAAGAGTCACCCAGAATGTGCTCGGTTTTCACCAGATGGACAGTTCCTTGTTTCTTGTTCTGTTGATGGATTTATTGAGGTTTGGGATCACATAAGTGGGAAACTGAAGAAGGATCTTCAGTATCAGGCTGAAGAAACATTTATGATGCACGAGGATGCTGTTCTTTGTGTTGATTTTAGTAGAGATTCAGAGATGCTTGCATCTGGCTCACAAGACGGAAAAATTAAAGTTTGGCGCATAAGGACTGGTCAATGCTTGCGCCGTCTTGAACGTGCACATTCTCAGGGTGTCACTAGTCTCGTCTTCTCTCGAGATGGAACTCAGCTGTTAAGCACGTCATTTGACGGAACTGCAAGAATCCATGGATTGAAGTCTGGAAAGTTGTTAAAGGAATTTCGCGGCCATTCATCTTACGTGAATGATGCCATCTTTACTAGTGATGGAGTTCGGGTCATTACTGCATCCAGTGATTGTACAGTCAAGGTTTGGGACGTGAAGACTACAGAGTGCCTGCAGACATTTAAGCCACCTCCACCTTTAAGGGGAGGTGATGCATCAGTAAATTCTGTTCATCTTTTCCCGAAAAACACAGATCACATTATTGTGTGTAACAAGACCTCATCAATATACCTCATGACACTCCAAGGACAGGTTGTAAAGAGTTTCTCATCTGGTAAAAGGGAAGGTGGAGATTTTGCGGCAGCTTGTTTATCACCAAAAGGGGAATGGATCTACTGTGTTGGCGAAGACAGAAATATGTACTGCTTCAGCCACCAATCTGGCAAGCTTGAGCATTTAATGAAGGTGCATGAAAAGGATGTAATTGGGATCACTCACCATCCCCACAGGAACCTTGTGGCTACATATGGTGAAGACTGCACCATGAAACTCTGGAAGCCCTGA

Network for GWHGAAZE030289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17814.2	LisH_TPL	8	37	8.40E-16
PF00400.33	WD40	217	242	4.70E-05
PF00400.33	WD40	263	291	3.90E-06
PF00400.33	WD40	296	333	0.00027
PF00400.33	WD40	339	377	1.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.389
	SRR3591706	second leaf	31.621
	SRR3591707	mature leaf	35.186
	SRR3591708	Shoot apex	69.881
	SRR3591709	Stem	58.392
	SRR3591710	White floral bud	56.630
	SRR3591711	White flower	81.832
	SRR3591712	Green floral bud	54.066
	SRR3591713	Yellow flower	72.338
SRP173429	SRR8316895	Juvenile bud stage	35.016
	SRR8316896	Juvenile bud stage	47.281
	SRR8316897	Juvenile bud stage	21.692
	SRR8316894	Third green stage	17.964
	SRR8316900	Third green stage	47.218
	SRR8316901	Third green stage	46.388
	SRR8316898	Complete white stage	25.370
	SRR8316899	Complete white stage	64.551
	SRR8316903	Complete white stage	32.882
	SRR8316902	Silver flowering stage	31.741
	SRR8316904	Silver flowering stage	38.652
	SRR8316905	Silver flowering stage	18.625
	SRR8316906	Gold flowering stage	66.400
	SRR8316907	Gold flowering stage	64.713
	SRR8316908	Gold flowering stage	68.546
SRP132670	SRR6706286	Control	35.068
	SRR6706287	Light intensity 50%	39.429
	SRR6706288	Light intensity 20%	40.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.455
	CNS0095593	Slightly white alabastrum(diploid) 2	31.249
	CNS0095594	Slightly white alabastrum(diploid) 3	27.803
	CNS0095595	Whole white alabastrum(diploid) 2	26.657
	CNS0095596	Whole white alabastrum(diploid) 3	23.602
	CNS0095597	Whole white alabastrum(diploid) 4	23.667
	CNS0095598	Silvery flower (diploied) 1	37.195
	CNS0095599	Silvery flower (diploied) 2	29.066
	CNS0095600	Silvery flower (diploied) 3	47.264
	CNS0095601	Golden flower (diploid) 1	32.468
	CNS0095602	Golden flower (diploid) 2	41.800
	CNS0095603	Golden flower (diploid) 3	45.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.926
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.090
	CNS0095610	Silvery flower (tetraploid) 1	51.303
	CNS0095611	Silvery flower (tetraploid) 2	48.868
	CNS0095612	Silvery flower (tetraploid) 3	59.429
	CNS0095613	Golden flower (tetraploid) 1	31.829
	CNS0095614	Golden flower (tetraploid) 2	39.127
	CNS0095615	Golden flower (tetraploid) 3	49.127
CRA001975	CRR073297	Stem 1	53.444
	CRR073298	Stem 2	47.481
	CRR073299	Stem 3	59.128
	CRR073300	Leaf 1	41.231
	CRR073301	Leaf 2	46.432
	CRR073302	Leaf 3	51.330
	CRR073303	Juvenile bud 1	44.098
	CRR073304	Juvenile bud 2	36.346
	CRR073305	Juvenile bud 3	49.013
	CRR073306	Third green 1	36.579
	CRR073307	Third green 2	34.416
	CRR073308	Third green 3	33.727
	CRR073309	Second white 1	57.577
	CRR073310	Second white 2	57.267
	CRR073311	Second white 3	56.345
	CRR073312	Silver flowering 1	50.123
	CRR073313	Silver flowering 2	55.248
	CRR073314	Silver flowering 3	42.757
	CRR073315	Gold flowering 1	37.303
	CRR073316	Gold flowering 2	46.218
	CRR073317	Gold flowering 3	40.516
	CRR073318	Tawny withering 1	58.370
	CRR073319	Tawny withering 2	43.699
	CRR073320	Tawny withering 3	51.924