Gene detail

Detail information of GWHGAAZE030304

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269119.2	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Vitis vinifera]
COG	YP_008797149.1	8E-69	conserved hypothetical protein
Swissprot	tr\|Q9FX21\|STT3B_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
trEMBL	tr\|F6HVR5\|F6HVR5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58778.1}
TAIR10	AT1G34130.1	0	staurosporin and temperature sensitive 3-like b

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41308595	41315093	+
GWHAAZE00000009	mRNA	41308595	41315093	+
GWHAAZE00000009	exon	41308595	41309241	+
GWHAAZE00000009	exon	41309877	41310480	+
GWHAAZE00000009	exon	41310944	41311534	+
GWHAAZE00000009	exon	41312203	41312660	+
GWHAAZE00000009	exon	41312847	41312969	+
GWHAAZE00000009	exon	41314525	41314584	+
GWHAAZE00000009	exon	41314964	41315093	+
GWHAAZE00000009	five_prime_UTR	41308595	41308930	+
GWHAAZE00000009	CDS	41308931	41309241	+
GWHAAZE00000009	CDS	41309877	41310480	+
GWHAAZE00000009	CDS	41310944	41311534	+
GWHAAZE00000009	CDS	41312203	41312660	+
GWHAAZE00000009	CDS	41312847	41312969	+
GWHAAZE00000009	CDS	41314525	41314584	+
GWHAAZE00000009	CDS	41314964	41315093	+

Transcript Sequence
>GWHTAAZE030338 GTTGGATCATCCGAAAATATCCAACAAATGCAGAATCCTCAACAACAATGTCGTCAAACGAAAAACTACACACACTTTTTGTCACATTTTTATTGAGTATCATTCAACGATTCCTAAAATACGCACAAACACGAACATACACATCCGATGCGGATCAGATTTAATACCTTATTCGTTACTCCCCAAAACCTCTTCTTCCTTCACTCTCTCCAGAAAATCTCGATGGAAAATCCCCAAACCTAACCTACACCTCCATCTCCACCACCTCACTTCAAAGCCTTCACCTTTTCCAATTTTTCCGATCAACTCATTTACCCAATCGCATCAATCTCAGCCATGGTAGGCAAACTGGAGCCGATGAACGGGGCCGCGAAGCCGACCGTACCAGCGCCGGCGCCAGATCTGCTCTCTGCCAACACATTCTCCCTCAAAACCCTAAAATTGAAGACAAAACAACAGGAGATCCTGATCCGAGTTACGATCCTTGGCCTGGTGTACATTTTGGCTTTCATTACTCGTCTATTCAGTGTTCTTCGTTACGAGAGTATGATCCACGAGTTTGATCCATATTTCAATTATCGCACTACTCTCTATTTGACGGAGAAAGGATTTTATGAGTTTTGGAACTGGTTCGATTCCGAGAGCTGGTATCCCCTTGGCCGAATCATAGGCGGTACTCTCTACCCCGGCCTCATGGTCACTGCAGCCCTAATTTACTGGACAATTCGATTCCTCAGTTTCGCTGTTCACATTCGCGAGGTTTGCGTGTTGACAGCTCCATTTTTTGCTTCTAACACCACAATCGTTGCGTATTTCTTCGGTAAAGAGCTGTGGGACTCGGGGGCTGGGCTAGTTGCTGCTGCACTGATAGCAATTTGCCCAGGTTATATCTCGAGGTCTGTTGCTGGATCTTATGATAATGAAGGGGTTGCTATATTTGCGTTGTTGTTGACATTTTATTTGTTTGTTAAGGCGGTGAATAGTGGTTCTCTTGCTTGGGCTTTGGGGTCAGCTTTTGGATATTTCTATATGGTTTCGGCGTGGGGTGGTTATGTGTTTATAATTAATTTGATTCCGCTGTATGTGTTGGTTTTGTTGATTACCGGGAGGTATTCGATGAGGTTGTATGTTGCATACAATTGTACATACATTTTGGGAATGTTGCTTGCAATGCAGATTCGGTTTGTTGGGTTTCAGCATGTGCAATCGGGAGAGCATATGGCTGCAATGGGAGTGTTTTTCTTGATGCAGGTATTTTACTTCTTAGATTGGGTTAAACACATGTTAAATGATCCGAAGTTGTTTCAAGCCTTCTTGAAGATCACTGTAACATTTGCAGTTGGTGTTGGTGCTCTTGCTCTGGGAGTTGGTACAGCATCTGGGTATATCTCTCCATGGACCGGTCGGTTCTACTCTTTATTGGATCCAACATACGCTAAAGATCACATTCCCATAATTGCATCTGTTTCTGAGCATCAGCCAACGGCATGGTCATCTTTCATGTTTGATTTCCATATACTGCTTTACCTTTTCCCCGCGGGGTTATATTTTTGCTTCAAGCGATTGTCAGATGCCACAATATTTATAGTGATGTATGGTCTCACAAGCATGTATTTTGCCGGTGTAATGGTTCGACTGATTCTTGTTGCAACACCTGCAATGTGCCTTATTAGTGCTATTGCAGTCTCGGCCACCATAAAGAATTTAACTCAGTTGTTAAGGGGAAAGAGCAAGGTTGCTCCTACCAGTTCTGGCAAAGGATCAAGTAGTACGAAGGCTTCTTCTAAGGCGAGTCACTATTACCGTGTATTGTTGCTTTCTGATATGGATTCCTTTCTTAGACAGGGTTCAGTTGATCAATCTCTACCTTTCCAAAGGAACGGTGCAATAGCGTTGCTTGTTGGTGCTCTTTACTTGCTCAGTAGATATGCTATCCACTGTACTTGGGTCACGTCAGAGGCATACTCATCTCCCTCGATTGTCTTAGCTGCAAGGGGTGCCCATGGCCAAAGAGTCATCTTTGATGATTACCGTGAAGCATACTTTTGGCTTCGGCAGAATACTCCTTCAGATGCTAAGGTGATGTCATGGTGGGATTATGGTTATCAAATTACTGCAATGGGAAACAGAACCGTTATTGTAGACAACAACACATGGAACAATACCCACATTGCTACTGTTGGTCGTGCAATGTCATCCTATGAAGATGAAGCATATGATATAATGAGGTCATTGGATGTGGATTATGTGCTAGTTGTATTTGGAGGTGTTACTGGCTATTCATCTGACGATATTAATAAATTTTTGTGGATGGTGAGAATTGGAGGTGGAGTTTTCCCCATAATTAAGGAACCTGATTACCTTGTTAATGGCGAATACCGTGTTGACAAAGGTGCAGCTCCGAAGATGTTGAACTGCCTAATGTACAAGCTATCCTACTATCGCTTTGGAGAGCTGACAACAGAATACGGCAAACCTCCCGGGTATGACAGAGCAAGGGGAGTTGAAATAGGAAATAAAGATGTGAAGCTTGAATACTTGGAAGAGGCATTCACAACATCGAATTGGATTGTCAGGATTTACAAAGTCAAACCCCCCAAAAACAGGTGGTGA

Network for GWHGAAZE030304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02516.15	STT3	48	603	1.50E-120

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07151	STT3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0004576	molecular_function	oligosaccharyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.810
	SRR3591706	second leaf	44.324
	SRR3591707	mature leaf	23.807
	SRR3591708	Shoot apex	53.149
	SRR3591709	Stem	37.264
	SRR3591710	White floral bud	34.444
	SRR3591711	White flower	33.548
	SRR3591712	Green floral bud	37.651
	SRR3591713	Yellow flower	17.188
SRP173429	SRR8316895	Juvenile bud stage	34.383
	SRR8316896	Juvenile bud stage	47.733
	SRR8316897	Juvenile bud stage	19.756
	SRR8316894	Third green stage	17.421
	SRR8316900	Third green stage	38.373
	SRR8316901	Third green stage	41.950
	SRR8316898	Complete white stage	9.329
	SRR8316899	Complete white stage	34.717
	SRR8316903	Complete white stage	21.430
	SRR8316902	Silver flowering stage	8.214
	SRR8316904	Silver flowering stage	15.865
	SRR8316905	Silver flowering stage	6.479
	SRR8316906	Gold flowering stage	17.866
	SRR8316907	Gold flowering stage	21.110
	SRR8316908	Gold flowering stage	22.590
SRP132670	SRR6706286	Control	34.355
	SRR6706287	Light intensity 50%	33.776
	SRR6706288	Light intensity 20%	32.961
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.915
	CNS0095593	Slightly white alabastrum(diploid) 2	30.889
	CNS0095594	Slightly white alabastrum(diploid) 3	40.719
	CNS0095595	Whole white alabastrum(diploid) 2	31.099
	CNS0095596	Whole white alabastrum(diploid) 3	33.239
	CNS0095597	Whole white alabastrum(diploid) 4	24.686
	CNS0095598	Silvery flower (diploied) 1	40.921
	CNS0095599	Silvery flower (diploied) 2	39.029
	CNS0095600	Silvery flower (diploied) 3	36.526
	CNS0095601	Golden flower (diploid) 1	23.321
	CNS0095602	Golden flower (diploid) 2	45.368
	CNS0095603	Golden flower (diploid) 3	42.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.857
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.766
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.624
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.595
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.076
	CNS0095610	Silvery flower (tetraploid) 1	25.123
	CNS0095611	Silvery flower (tetraploid) 2	22.529
	CNS0095612	Silvery flower (tetraploid) 3	14.595
	CNS0095613	Golden flower (tetraploid) 1	8.713
	CNS0095614	Golden flower (tetraploid) 2	23.447
	CNS0095615	Golden flower (tetraploid) 3	16.255
CRA001975	CRR073297	Stem 1	42.760
	CRR073298	Stem 2	39.420
	CRR073299	Stem 3	38.441
	CRR073300	Leaf 1	31.095
	CRR073301	Leaf 2	30.816
	CRR073302	Leaf 3	31.562
	CRR073303	Juvenile bud 1	22.121
	CRR073304	Juvenile bud 2	22.921
	CRR073305	Juvenile bud 3	35.171
	CRR073306	Third green 1	12.239
	CRR073307	Third green 2	10.466
	CRR073308	Third green 3	12.735
	CRR073309	Second white 1	10.011
	CRR073310	Second white 2	9.034
	CRR073311	Second white 3	9.322
	CRR073312	Silver flowering 1	16.091
	CRR073313	Silver flowering 2	21.743
	CRR073314	Silver flowering 3	15.335
	CRR073315	Gold flowering 1	14.185
	CRR073316	Gold flowering 2	30.505
	CRR073317	Gold flowering 3	25.448
	CRR073318	Tawny withering 1	49.873
	CRR073319	Tawny withering 2	34.317
	CRR073320	Tawny withering 3	46.664