Detail information of GWHGAAZE030305


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008240345.12.4036E-99PREDICTED: E3 ubiquitin-protein ligase RING1-like [Prunus mume]
Swissprottr|P0CH30|RING1_GOSHI3E-86E3 ubiquitin-protein ligase RING1
trEMBLtr|A9PF85|A9PF85_POPTR3E-98Uncharacterized protein {ECO:0000313|EMBL:ERP52072.1}
TAIR10AT3G19950.12E-62RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4131914241319906-
GWHAAZE00000009mRNA4131914241319906-
GWHAAZE00000009exon4131914241319906-
GWHAAZE00000009CDS4131914241319906-
Transcript Sequence

Network for GWHGAAZE030305

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21201625.90E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.900
SRR3591706second leaf7.112
SRR3591707mature leaf8.948
SRR3591708Shoot apex12.893
SRR3591709Stem5.875
SRR3591710White floral bud3.008
SRR3591711White flower2.251
SRR3591712Green floral bud2.868
SRR3591713Yellow flower1.632
SRP173429 SRR8316895Juvenile bud stage 51.949
SRR8316896Juvenile bud stage 35.583
SRR8316897Juvenile bud stage 40.141
SRR8316894Third green stage 4.327
SRR8316900Third green stage 11.846
SRR8316901Third green stage 23.497
SRR8316898Complete white stage 6.080
SRR8316899Complete white stage 75.192
SRR8316903Complete white stage 8.978
SRR8316902Silver flowering stage4.862
SRR8316904Silver flowering stage6.738
SRR8316905Silver flowering stage4.185
SRR8316906Gold flowering stage 9.109
SRR8316907Gold flowering stage 11.563
SRR8316908Gold flowering stage 9.883
SRP132670SRR6706286Control11.810
SRR6706287Light intensity 50%9.900
SRR6706288Light intensity 20%11.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.118
CNS0095593Slightly white alabastrum(diploid) 225.261
CNS0095594Slightly white alabastrum(diploid) 330.368
CNS0095595Whole white alabastrum(diploid) 225.000
CNS0095596Whole white alabastrum(diploid) 310.618
CNS0095597Whole white alabastrum(diploid) 418.759
CNS0095598Silvery flower (diploied) 148.226
CNS0095599Silvery flower (diploied) 281.737
CNS0095600Silvery flower (diploied) 333.398
CNS0095601Golden flower (diploid) 176.294
CNS0095602Golden flower (diploid) 249.607
CNS0095603Golden flower (diploid) 342.740
CNS0095604Slightly white alabastrum(tetraploid) 111.903
CNS0095605Slightly white alabastrum(tetraploid) 210.881
CNS0095606Slightly white alabastrum(tetraploid) 38.461
CNS0095607Whole white alabastrum(tetraploid) 112.092
CNS0095608Whole white alabastrum(tetraploid) 29.387
CNS0095609Whole white alabastrum(tetraploid) 312.581
CNS0095610Silvery flower (tetraploid) 111.918
CNS0095611Silvery flower (tetraploid) 211.179
CNS0095612Silvery flower (tetraploid) 314.976
CNS0095613Golden flower (tetraploid) 17.493
CNS0095614Golden flower (tetraploid) 210.161
CNS0095615Golden flower (tetraploid) 36.591
CRA001975CRR073297Stem 114.723
CRR073298Stem 216.645
CRR073299Stem 316.175
CRR073300Leaf 116.242
CRR073301Leaf 221.698
CRR073302Leaf 316.823
CRR073303Juvenile bud 117.613
CRR073304Juvenile bud 232.113
CRR073305Juvenile bud 334.218
CRR073306Third green 110.850
CRR073307Third green 214.038
CRR073308Third green 311.566
CRR073309Second white 114.839
CRR073310Second white 28.741
CRR073311Second white 37.430
CRR073312Silver flowering 110.446
CRR073313Silver flowering 218.847
CRR073314Silver flowering 311.484
CRR073315Gold flowering 17.218
CRR073316Gold flowering 218.647
CRR073317Gold flowering 329.103
CRR073318Tawny withering 119.314
CRR073319Tawny withering 268.619
CRR073320Tawny withering 317.085