Detail information of GWHGAAZE030311


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271225.10PREDICTED: protein argonaute 1 [Vitis vinifera]
Swissprottr|Q6EU14|AGO1A_ORYSJ0Protein argonaute 1A
trEMBLtr|F6HVU3|F6HVU3_VITVI0Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIR10AT1G48410.10Stabilizer of iron transporter SufD / Polynucleotidyl transferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4138401941417418-
GWHAAZE00000009mRNA4138401941417418-
GWHAAZE00000009exon4141691241417418-
GWHAAZE00000009exon4141535641415547-
GWHAAZE00000009exon4141219741412295-
GWHAAZE00000009exon4141194441412081-
GWHAAZE00000009exon4141150941411757-
GWHAAZE00000009exon4141008241410342-
GWHAAZE00000009exon4140959941409744-
GWHAAZE00000009exon4140220641402283-
GWHAAZE00000009exon4140159441401723-
GWHAAZE00000009exon4140100741401253-
GWHAAZE00000009exon4140075341400915-
GWHAAZE00000009exon4139974241399879-
GWHAAZE00000009exon4139391241393948-
GWHAAZE00000009exon4139160641392358-
GWHAAZE00000009exon4139130541391513-
GWHAAZE00000009exon4139106641391215-
GWHAAZE00000009exon4139079141390924-
GWHAAZE00000009exon4139056941390678-
GWHAAZE00000009exon4139039841390495-
GWHAAZE00000009exon4138958541389723-
GWHAAZE00000009exon4138939741389513-
GWHAAZE00000009exon4138851641388623-
GWHAAZE00000009exon4138835341388424-
GWHAAZE00000009exon4138759141387713-
GWHAAZE00000009exon4138732141387486-
GWHAAZE00000009exon4138695041387209-
GWHAAZE00000009exon4138671841386860-
GWHAAZE00000009exon4138631741386379-
GWHAAZE00000009exon4138617341386236-
GWHAAZE00000009exon4138594941386084-
GWHAAZE00000009exon4138578141385854-
GWHAAZE00000009exon4138558541385679-
GWHAAZE00000009exon4138540341385434-
GWHAAZE00000009exon4138503741385239-
GWHAAZE00000009exon4138401941384222-
GWHAAZE00000009CDS4141691241417418-
GWHAAZE00000009CDS4141535641415547-
GWHAAZE00000009CDS4141219741412295-
GWHAAZE00000009CDS4141194441412081-
GWHAAZE00000009CDS4141150941411757-
GWHAAZE00000009CDS4141008241410342-
GWHAAZE00000009CDS4140959941409744-
GWHAAZE00000009CDS4140220641402283-
GWHAAZE00000009CDS4140159441401723-
GWHAAZE00000009CDS4140100741401253-
GWHAAZE00000009CDS4140075341400915-
GWHAAZE00000009CDS4139974241399879-
GWHAAZE00000009CDS4139391241393948-
GWHAAZE00000009CDS4139160641392358-
GWHAAZE00000009CDS4139130541391513-
GWHAAZE00000009CDS4139106641391215-
GWHAAZE00000009CDS4139079141390924-
GWHAAZE00000009CDS4139056941390678-
GWHAAZE00000009CDS4139039841390495-
GWHAAZE00000009CDS4138958541389723-
GWHAAZE00000009CDS4138939741389513-
GWHAAZE00000009CDS4138851641388623-
GWHAAZE00000009CDS4138835341388424-
GWHAAZE00000009CDS4138759141387713-
GWHAAZE00000009CDS4138732141387486-
GWHAAZE00000009CDS4138695041387209-
GWHAAZE00000009CDS4138671841386860-
GWHAAZE00000009CDS4138631741386379-
GWHAAZE00000009CDS4138617341386236-
GWHAAZE00000009CDS4138594941386084-
GWHAAZE00000009CDS4138578141385854-
GWHAAZE00000009CDS4138558541385679-
GWHAAZE00000009CDS4138540341385434-
GWHAAZE00000009CDS4138503741385239-
GWHAAZE00000009CDS4138401941384222-
Transcript Sequence

Network for GWHGAAZE030311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.32Ion_trans2075313.40E-24
PF12764.8Gly-rich_Ago189110062.20E-14
PF16486.6ArgoN102511591.00E-31
PF08699.11ArgoL1116912192.40E-21
PF02170.23PAZ128113478.20E-14
PF16488.6ArgoL2135814042.40E-15
PF16487.6ArgoMid141514893.20E-08
PF02171.18Piwi150918284.80E-115
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0006811biological_procession transport
GO:0055085biological_processtransmembrane transport
GO:0016020cellular_componentmembrane
GO:0003676molecular_functionnucleic acid binding
GO:0005216molecular_functionion channel activity
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf138.053
SRR3591706second leaf81.976
SRR3591707mature leaf40.845
SRR3591708Shoot apex124.473
SRR3591709Stem183.086
SRR3591710White floral bud163.810
SRR3591711White flower118.562
SRR3591712Green floral bud127.684
SRR3591713Yellow flower81.070
SRP173429 SRR8316895Juvenile bud stage 58.068
SRR8316896Juvenile bud stage 74.434
SRR8316897Juvenile bud stage 35.889
SRR8316894Third green stage 34.468
SRR8316900Third green stage 91.727
SRR8316901Third green stage 81.665
SRR8316898Complete white stage 38.767
SRR8316899Complete white stage 127.307
SRR8316903Complete white stage 75.006
SRR8316902Silver flowering stage30.319
SRR8316904Silver flowering stage46.134
SRR8316905Silver flowering stage23.749
SRR8316906Gold flowering stage 73.817
SRR8316907Gold flowering stage 63.777
SRR8316908Gold flowering stage 84.368
SRP132670SRR6706286Control129.695
SRR6706287Light intensity 50%130.046
SRR6706288Light intensity 20%132.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.396
CNS0095593Slightly white alabastrum(diploid) 237.128
CNS0095594Slightly white alabastrum(diploid) 335.564
CNS0095595Whole white alabastrum(diploid) 237.371
CNS0095596Whole white alabastrum(diploid) 332.710
CNS0095597Whole white alabastrum(diploid) 433.568
CNS0095598Silvery flower (diploied) 160.254
CNS0095599Silvery flower (diploied) 251.764
CNS0095600Silvery flower (diploied) 379.691
CNS0095601Golden flower (diploid) 152.221
CNS0095602Golden flower (diploid) 277.573
CNS0095603Golden flower (diploid) 379.307
CNS0095604Slightly white alabastrum(tetraploid) 155.076
CNS0095605Slightly white alabastrum(tetraploid) 238.759
CNS0095606Slightly white alabastrum(tetraploid) 3121.884
CNS0095607Whole white alabastrum(tetraploid) 138.575
CNS0095608Whole white alabastrum(tetraploid) 229.169
CNS0095609Whole white alabastrum(tetraploid) 394.775
CNS0095610Silvery flower (tetraploid) 183.511
CNS0095611Silvery flower (tetraploid) 294.508
CNS0095612Silvery flower (tetraploid) 393.746
CNS0095613Golden flower (tetraploid) 130.806
CNS0095614Golden flower (tetraploid) 277.440
CNS0095615Golden flower (tetraploid) 355.108
CRA001975CRR073297Stem 1107.464
CRR073298Stem 294.795
CRR073299Stem 395.783
CRR073300Leaf 1121.223
CRR073301Leaf 2104.366
CRR073302Leaf 386.835
CRR073303Juvenile bud 185.004
CRR073304Juvenile bud 269.958
CRR073305Juvenile bud 3131.386
CRR073306Third green 157.417
CRR073307Third green 247.047
CRR073308Third green 361.256
CRR073309Second white 141.242
CRR073310Second white 248.809
CRR073311Second white 353.787
CRR073312Silver flowering 140.140
CRR073313Silver flowering 238.384
CRR073314Silver flowering 334.687
CRR073315Gold flowering 123.999
CRR073316Gold flowering 239.701
CRR073317Gold flowering 321.944
CRR073318Tawny withering 166.920
CRR073319Tawny withering 250.616
CRR073320Tawny withering 369.221