Gene detail

Detail information of GWHGAAZE030312

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010276236.1	0	PREDICTED: glutamate decarboxylase-like [Nelumbo nucifera]
COG	YP_004290634.1	3E-172	glutamate decarboxylase
Swissprot	tr\|P54767\|DCE_SOLLC	0	Glutamate decarboxylase
trEMBL	tr\|W1PUY0\|W1PUY0_AMBTC	0	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}
TAIR10	AT2G02010.1	0	glutamate decarboxylase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	41435094	41439380	+
GWHAAZE00000009	mRNA	41435094	41439380	+
GWHAAZE00000009	exon	41435094	41435232	+
GWHAAZE00000009	exon	41435375	41435579	+
GWHAAZE00000009	exon	41436385	41436585	+
GWHAAZE00000009	exon	41436874	41437342	+
GWHAAZE00000009	exon	41437845	41437897	+
GWHAAZE00000009	exon	41438934	41439380	+
GWHAAZE00000009	five_prime_UTR	41435094	41435146	+
GWHAAZE00000009	CDS	41435147	41435232	+
GWHAAZE00000009	CDS	41435375	41435579	+
GWHAAZE00000009	CDS	41436385	41436585	+
GWHAAZE00000009	CDS	41436874	41437342	+
GWHAAZE00000009	CDS	41437845	41437897	+
GWHAAZE00000009	CDS	41438934	41439380	+

Transcript Sequence
>GWHTAAZE030346 ACGAAAGAAATAGTAGAGAGAAAGAAGTATATTGCTTGGAACTGATAAAGAAAATGGTGATCAGCACGACTATATCCGATGCCGGTGACTCTTTGAACTGCACATTTGCTTCCAGATATGTCCGCACTTCCCTTCCAAGGTATAAGATGCCAGAGAAATCGATACCGAAGGAAGCCGCGTATCAGATCATAAGTGATGAGTTGATGTTGGACGGGAACCCGAGGCTGAATCTGGCGTCTTTTGTCACCACTTGGATGGAGCCAGAGTGTGATCGCCTTATTATGTCTTCCATCAATAAGAACTATGTTGATATGGATGAGTACCCCATCACCACTGAACTTCAGAATCGGTGTGTTAATATCATAGCCCATCTTTTCAATGCACCTGTCGGAGAAGAAGAGGCTGCCGTGGGTGTTAGCACAGTTGGTTCGTCCGAAGCAATAATGCTGGCAGGTCTTGCTTTCAAAAGAAAGTGGCAGGACAGGAGAAAAGCTGAAGGCAAACCATACAATAAGCCCAATATCGTCACTGGAGCTAACGTTCAGGTTTGCTGGGAAAAATTTGCCAGGTATTTTGAGGTTGAACTGAAAGAAGTGAAATTAAAGGAAGGGTACTATGTAATGGACCCTGTAAAAGCAGTGGAAATGGTGGATGAGAACACCATATGTGTGGCAGCCATACTAGGCTCAACCTTGACAGGCGAATTTGAAGATGTGAAGCTCCTTAACGACCTCCTTACCAAAAAGAACAAGGAAACTGGATGGAGCACCCCAATTCACGTAGATGCTGCCAGCGGAGGGTTTATCGCCCCGTTCCTTTACCCGGACCTCGAGTGGGATTTCCGCTTGCCACTGGTGAAGAGCATCAATGTAAGCGGTCACAAGTACGGCCTTGTTTATGCTGGTGTTGGGTGGGTAGTGTGGAGGAGCAAAGTGGATTTGCCTGATGATCTTGTCTTTCATATCAACTATCTCGGATCTGATCAGCCCACTTTCACCCTCAACTTCTCTAAAGGCTCCAGCCAAATAATTGCTCAGTATTATCAGCTCATAAGGCTTGGCTTCGAGGGTTACAAGAACATAATGGGGAACTGCACGGTAAATGCGAGGGCCCTAAAAGAAGGAATAGAAAAGACAGGCCGATTCAATATCCTGTCAAAAGACGTTGGGGTCCCCCTAGTGGCATTCTCTCTGAAGGACAGCAGTAAATACACTGTTTTTGAGATTGCAGATTATTTGAGAAAATTCGGATGGATCGTTCCGGCATACACAATGCCCGCGGATGCCCAACACGTTGCTGTTCTTCGCGTTGTAATTCGAGAGGACTTCAATCACTCTCTAGCAGAGAGACTTATACACGATATAGTGAAAGTAATAGAAGAGATTGAAGCATTGCCTCCACGCGTATCGGACAAAAGCGCGAGTGTTAAAAGGGGTGGGAAAGAGACTGCAGCAGAAGTAGCTGCGATTTGGAAAAAGTTTGTCCAGGGAAAGGAGCATAACAAAGTTTGCTAA

Network for GWHGAAZE030312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	33	381	2.80E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Butanoate metabolism	map00650
		Alanine, aspartate and glutamate metabolism	map00250
		beta-Alanine metabolism	map00410
		Taurine and hypotaurine metabolism	map00430
		Quorum sensing	map02024
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006536	biological_process	glutamate metabolic process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004351	molecular_function	glutamate decarboxylase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0016831	molecular_function	carboxy-lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	234.118
	SRR3591706	second leaf	79.978
	SRR3591707	mature leaf	84.413
	SRR3591708	Shoot apex	102.907
	SRR3591709	Stem	243.429
	SRR3591710	White floral bud	157.454
	SRR3591711	White flower	124.029
	SRR3591712	Green floral bud	200.662
	SRR3591713	Yellow flower	76.391
SRP173429	SRR8316895	Juvenile bud stage	104.611
	SRR8316896	Juvenile bud stage	121.201
	SRR8316897	Juvenile bud stage	62.983
	SRR8316894	Third green stage	77.216
	SRR8316900	Third green stage	353.966
	SRR8316901	Third green stage	286.302
	SRR8316898	Complete white stage	199.674
	SRR8316899	Complete white stage	550.192
	SRR8316903	Complete white stage	235.264
	SRR8316902	Silver flowering stage	76.962
	SRR8316904	Silver flowering stage	93.363
	SRR8316905	Silver flowering stage	39.926
	SRR8316906	Gold flowering stage	70.430
	SRR8316907	Gold flowering stage	94.411
	SRR8316908	Gold flowering stage	106.011
SRP132670	SRR6706286	Control	468.285
	SRR6706287	Light intensity 50%	442.173
	SRR6706288	Light intensity 20%	473.730
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	120.234
	CNS0095593	Slightly white alabastrum(diploid) 2	160.145
	CNS0095594	Slightly white alabastrum(diploid) 3	101.511
	CNS0095595	Whole white alabastrum(diploid) 2	174.289
	CNS0095596	Whole white alabastrum(diploid) 3	168.582
	CNS0095597	Whole white alabastrum(diploid) 4	149.092
	CNS0095598	Silvery flower (diploied) 1	363.627
	CNS0095599	Silvery flower (diploied) 2	309.320
	CNS0095600	Silvery flower (diploied) 3	226.186
	CNS0095601	Golden flower (diploid) 1	266.868
	CNS0095602	Golden flower (diploid) 2	251.278
	CNS0095603	Golden flower (diploid) 3	247.238
	CNS0095604	Slightly white alabastrum(tetraploid) 1	202.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	153.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	437.596
	CNS0095607	Whole white alabastrum(tetraploid) 1	137.283
	CNS0095608	Whole white alabastrum(tetraploid) 2	128.485
	CNS0095609	Whole white alabastrum(tetraploid) 3	357.435
	CNS0095610	Silvery flower (tetraploid) 1	276.753
	CNS0095611	Silvery flower (tetraploid) 2	391.576
	CNS0095612	Silvery flower (tetraploid) 3	200.926
	CNS0095613	Golden flower (tetraploid) 1	123.299
	CNS0095614	Golden flower (tetraploid) 2	233.861
	CNS0095615	Golden flower (tetraploid) 3	29.011
CRA001975	CRR073297	Stem 1	306.766
	CRR073298	Stem 2	291.595
	CRR073299	Stem 3	295.546
	CRR073300	Leaf 1	442.070
	CRR073301	Leaf 2	492.575
	CRR073302	Leaf 3	482.273
	CRR073303	Juvenile bud 1	622.076
	CRR073304	Juvenile bud 2	544.117
	CRR073305	Juvenile bud 3	760.651
	CRR073306	Third green 1	289.603
	CRR073307	Third green 2	220.850
	CRR073308	Third green 3	221.584
	CRR073309	Second white 1	120.872
	CRR073310	Second white 2	49.491
	CRR073311	Second white 3	33.282
	CRR073312	Silver flowering 1	32.705
	CRR073313	Silver flowering 2	39.624
	CRR073314	Silver flowering 3	33.356
	CRR073315	Gold flowering 1	141.220
	CRR073316	Gold flowering 2	178.277
	CRR073317	Gold flowering 3	128.965
	CRR073318	Tawny withering 1	330.173
	CRR073319	Tawny withering 2	228.503
	CRR073320	Tawny withering 3	312.511