Detail information of GWHGAAZE030316


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006494619.11.1573E-177PREDICTED: zinc finger protein MAGPIE-like [Citrus sinensis]
Swissprottr|F4IPE3|IDD15_ARATH1E-141Protein SHOOT GRAVITROPISM 5
trEMBLtr|A0A067DQB5|A0A067DQB5_CITSI4E-178Uncharacterized protein {ECO:0000313|EMBL:KDO41207.1} (Fragment)
TAIR10AT2G01940.12E-93C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4150023941502886-
GWHAAZE00000009mRNA4150023941502886-
GWHAAZE00000009exon4150252541502886-
GWHAAZE00000009exon4150190541502304-
GWHAAZE00000009exon4150023941501010-
GWHAAZE00000009five_prime_UTR4150262241502886-
GWHAAZE00000009CDS4150252541502621-
GWHAAZE00000009CDS4150190541502304-
GWHAAZE00000009CDS4150038341501010-
GWHAAZE00000009three_prime_UTR4150023941500382-
Transcript Sequence

Network for GWHGAAZE030316

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.27zf-C2H252740.0034
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.296
SRR3591706second leaf11.801
SRR3591707mature leaf2.180
SRR3591708Shoot apex11.788
SRR3591709Stem27.491
SRR3591710White floral bud21.969
SRR3591711White flower7.452
SRR3591712Green floral bud37.507
SRR3591713Yellow flower1.406
SRP173429 SRR8316895Juvenile bud stage 3.702
SRR8316896Juvenile bud stage 5.670
SRR8316897Juvenile bud stage 1.853
SRR8316894Third green stage 6.297
SRR8316900Third green stage 20.166
SRR8316901Third green stage 12.759
SRR8316898Complete white stage 5.179
SRR8316899Complete white stage 35.371
SRR8316903Complete white stage 8.992
SRR8316902Silver flowering stage2.858
SRR8316904Silver flowering stage4.635
SRR8316905Silver flowering stage2.351
SRR8316906Gold flowering stage 2.130
SRR8316907Gold flowering stage 1.352
SRR8316908Gold flowering stage 3.410
SRP132670SRR6706286Control12.493
SRR6706287Light intensity 50%11.556
SRR6706288Light intensity 20%11.475
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.063
CNS0095593Slightly white alabastrum(diploid) 28.247
CNS0095594Slightly white alabastrum(diploid) 35.615
CNS0095595Whole white alabastrum(diploid) 29.267
CNS0095596Whole white alabastrum(diploid) 314.342
CNS0095597Whole white alabastrum(diploid) 46.499
CNS0095598Silvery flower (diploied) 13.929
CNS0095599Silvery flower (diploied) 22.866
CNS0095600Silvery flower (diploied) 31.988
CNS0095601Golden flower (diploid) 12.153
CNS0095602Golden flower (diploid) 20.820
CNS0095603Golden flower (diploid) 30.626
CNS0095604Slightly white alabastrum(tetraploid) 19.418
CNS0095605Slightly white alabastrum(tetraploid) 27.779
CNS0095606Slightly white alabastrum(tetraploid) 314.638
CNS0095607Whole white alabastrum(tetraploid) 18.417
CNS0095608Whole white alabastrum(tetraploid) 26.345
CNS0095609Whole white alabastrum(tetraploid) 310.736
CNS0095610Silvery flower (tetraploid) 14.490
CNS0095611Silvery flower (tetraploid) 23.880
CNS0095612Silvery flower (tetraploid) 36.944
CNS0095613Golden flower (tetraploid) 10.425
CNS0095614Golden flower (tetraploid) 21.712
CNS0095615Golden flower (tetraploid) 31.216
CRA001975CRR073297Stem 119.220
CRR073298Stem 225.206
CRR073299Stem 321.133
CRR073300Leaf 132.365
CRR073301Leaf 228.636
CRR073302Leaf 325.801
CRR073303Juvenile bud 137.684
CRR073304Juvenile bud 222.995
CRR073305Juvenile bud 332.090
CRR073306Third green 111.140
CRR073307Third green 211.641
CRR073308Third green 316.108
CRR073309Second white 10.671
CRR073310Second white 21.056
CRR073311Second white 30.500
CRR073312Silver flowering 10.041
CRR073313Silver flowering 20.118
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.983
CRR073316Gold flowering 21.248
CRR073317Gold flowering 32.299
CRR073318Tawny withering 11.983
CRR073319Tawny withering 21.021
CRR073320Tawny withering 33.549