Detail information of GWHGAAZE030327


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010318654.12.3014E-99PREDICTED: protein TIFY 6B isoform X2 [Solanum lycopersicum]
Swissprottr|Q9LVI4|TIF6B_ARATH2E-37Protein TIFY 6B
trEMBLtr|T1WMB9|T1WMB9_TOBAC5E-99Jasmonate ZIM-domain protein 7b {ECO:0000313|EMBL:AGU37277.1}
TAIR10AT3G17860.39E-26jasmonate-zim-domain protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4176208941764486-
GWHAAZE00000009mRNA4176208941764486-
GWHAAZE00000009exon4176433741764486-
GWHAAZE00000009exon4176382641764118-
GWHAAZE00000009exon4176363041763720-
GWHAAZE00000009exon4176305541763391-
GWHAAZE00000009exon4176288141762938-
GWHAAZE00000009exon4176208941762447-
GWHAAZE00000009CDS4176433741764486-
GWHAAZE00000009CDS4176382641764118-
GWHAAZE00000009CDS4176363041763720-
GWHAAZE00000009CDS4176305541763391-
GWHAAZE00000009CDS4176288141762938-
GWHAAZE00000009CDS4176233641762447-
GWHAAZE00000009three_prime_UTR4176208941762335-
Transcript Sequence

Network for GWHGAAZE030327

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06200.15tify1561873.90E-16
PF09425.11Jas_motif2933178.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTify

KEGG pathway

KO Enzyme pathway mapID
K13464JAZ Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.294
SRR3591706second leaf96.880
SRR3591707mature leaf50.100
SRR3591708Shoot apex44.404
SRR3591709Stem14.183
SRR3591710White floral bud30.287
SRR3591711White flower15.150
SRR3591712Green floral bud47.781
SRR3591713Yellow flower10.107
SRP173429 SRR8316895Juvenile bud stage 30.794
SRR8316896Juvenile bud stage 48.601
SRR8316897Juvenile bud stage 27.824
SRR8316894Third green stage 11.093
SRR8316900Third green stage 35.935
SRR8316901Third green stage 49.712
SRR8316898Complete white stage 8.163
SRR8316899Complete white stage 69.055
SRR8316903Complete white stage 11.603
SRR8316902Silver flowering stage3.094
SRR8316904Silver flowering stage3.435
SRR8316905Silver flowering stage2.340
SRR8316906Gold flowering stage 7.159
SRR8316907Gold flowering stage 3.528
SRR8316908Gold flowering stage 7.022
SRP132670SRR6706286Control36.023
SRR6706287Light intensity 50%45.021
SRR6706288Light intensity 20%54.649
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.012
CNS0095593Slightly white alabastrum(diploid) 228.015
CNS0095594Slightly white alabastrum(diploid) 325.005
CNS0095595Whole white alabastrum(diploid) 223.469
CNS0095596Whole white alabastrum(diploid) 320.971
CNS0095597Whole white alabastrum(diploid) 418.603
CNS0095598Silvery flower (diploied) 17.917
CNS0095599Silvery flower (diploied) 222.759
CNS0095600Silvery flower (diploied) 38.142
CNS0095601Golden flower (diploid) 111.496
CNS0095602Golden flower (diploid) 29.916
CNS0095603Golden flower (diploid) 39.400
CNS0095604Slightly white alabastrum(tetraploid) 124.797
CNS0095605Slightly white alabastrum(tetraploid) 225.732
CNS0095606Slightly white alabastrum(tetraploid) 332.950
CNS0095607Whole white alabastrum(tetraploid) 117.350
CNS0095608Whole white alabastrum(tetraploid) 217.700
CNS0095609Whole white alabastrum(tetraploid) 334.714
CNS0095610Silvery flower (tetraploid) 110.176
CNS0095611Silvery flower (tetraploid) 27.037
CNS0095612Silvery flower (tetraploid) 33.528
CNS0095613Golden flower (tetraploid) 12.538
CNS0095614Golden flower (tetraploid) 27.747
CNS0095615Golden flower (tetraploid) 33.416
CRA001975CRR073297Stem 138.453
CRR073298Stem 235.929
CRR073299Stem 334.686
CRR073300Leaf 159.160
CRR073301Leaf 257.605
CRR073302Leaf 351.202
CRR073303Juvenile bud 146.575
CRR073304Juvenile bud 270.011
CRR073305Juvenile bud 350.884
CRR073306Third green 15.990
CRR073307Third green 25.682
CRR073308Third green 35.148
CRR073309Second white 12.076
CRR073310Second white 23.036
CRR073311Second white 32.283
CRR073312Silver flowering 11.823
CRR073313Silver flowering 21.358
CRR073314Silver flowering 31.288
CRR073315Gold flowering 131.992
CRR073316Gold flowering 242.615
CRR073317Gold flowering 327.856
CRR073318Tawny withering 118.690
CRR073319Tawny withering 238.415
CRR073320Tawny withering 320.141