Gene detail

Detail information of GWHGAAZE030342

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15009.3	2.4799E-178	unnamed protein product [Vitis vinifera]
trEMBL	tr\|K4BKD5\|K4BKD5_SOLLC	3E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g112820.2.1}
TAIR10	AT5G66540.1	3E-86	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42039397	42046899	+
GWHAAZE00000009	mRNA	42039397	42046899	+
GWHAAZE00000009	exon	42039397	42039738	+
GWHAAZE00000009	exon	42040232	42040284	+
GWHAAZE00000009	exon	42041339	42041438	+
GWHAAZE00000009	exon	42041580	42041690	+
GWHAAZE00000009	exon	42041800	42041994	+
GWHAAZE00000009	exon	42043220	42043288	+
GWHAAZE00000009	exon	42043409	42043450	+
GWHAAZE00000009	exon	42043689	42043757	+
GWHAAZE00000009	exon	42043936	42044007	+
GWHAAZE00000009	exon	42044351	42044404	+
GWHAAZE00000009	exon	42044532	42044673	+
GWHAAZE00000009	exon	42046629	42046719	+
GWHAAZE00000009	exon	42046794	42046899	+
GWHAAZE00000009	CDS	42039397	42039738	+
GWHAAZE00000009	CDS	42040232	42040284	+
GWHAAZE00000009	CDS	42041339	42041438	+
GWHAAZE00000009	CDS	42041580	42041690	+
GWHAAZE00000009	CDS	42041800	42041994	+
GWHAAZE00000009	CDS	42043220	42043288	+
GWHAAZE00000009	CDS	42043409	42043450	+
GWHAAZE00000009	CDS	42043689	42043757	+
GWHAAZE00000009	CDS	42043936	42044007	+
GWHAAZE00000009	CDS	42044351	42044404	+
GWHAAZE00000009	CDS	42044532	42044673	+
GWHAAZE00000009	CDS	42046629	42046719	+
GWHAAZE00000009	CDS	42046794	42046899	+

Transcript Sequence
>GWHTAAZE030376 ATGGCGAAACCCGCCGACGGAGTTGAAGCGCTACACCGCCTTAAATCAACCGACCCACCGCTGTACCTCTCCCCGTCGTCGGAGCTATCTCAAGCTACCCGTTCGGCCGCCAGTTACATATTCTCTTCGCTCACTCCCCACACTCCCAAATCGCCCTTCGAACGTCTCTTAACTCAAGGATTCGACCACGAGCAGATTTTTCAGCAGATCGATCTCCAATTGCAGCCCTTGATCTCGAGTCTCCGTCGAGAAGTGAAGAAGTTTGAGAAGAATCCTGAAGAAATCTCCAAACTCTTCGGTGGATTTGAAAAGAAGAGCGACGATTTAGAGATCAAAGGAGAATTTGGACTTCTCGGTGCTGATGATGGTGATGATGAAGAAGGTGGAAGCGCAAGATACGAGGACTTCTTTGGTAACAATAAGAAGACTGTTCAAAAGAAAAAATCTAAACTGACAGATGGATCAGATGACTCAGACATGGATTTTGATAACCAGAAGAAAGAAAATCTGTCTACCCATGAAAAACAGCTTGAGAAACAGCGGTCTAAAATAGAGGAGATGGAGAAAGCAAACTTGGAACCTAAAACCTGGACTATGCAGGGGGAGTTTAGGGACCATGATTTTTTATGGCAGGTAACTGCTGCTAAAAGGCCCAAGAATAGTGCATTAGAGGTTGATCTTGACTTTGAGCACAATGTTAGGCCTGCTCCAGTCATAACAGAGGAGGTTACTGCATCCCTTGAAGAATTGATTCAGAAGCGGATCCTTGAGGTGAAATCCATTTTTATATTACTGATAAAAGGTCGTTTTGATGATGTCCAGAAGGCTCCAAGTTTACCGTCGAAGGCACCAAAAGAAGTAAAGGAACTGGATGAGAACAAGAGTAAGAAGGGCCTTGCTGAAGTTTACGCGGAAGAATATGTTGAGAAGACTGGACTGGTTTCTACAGCATTGTCTTTCTCAGATGAGCAAAAGAAAGAGGCAACTCAACTGTTCAAGAAATTGTGCTTGAAGTTGGACGCTCTATCGCATTTCCACTTCACTCCAAAACCAGTTATTGAAGATATGTCTATACAAGCAAATGTTCCTGCCTTAGCAATGGAAGAGATTGCTCCTCTGGCAGTCTCAGATGCAGCTATGCTGGCTCCTGAGGAAGTGTTTGCTGGCAAAGGGGATATCAAAGAAGAAACCGAGCTAACACAAGCTGAGAGGAAGAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGAAGCAGTTAAAAGGACGGCAAAGAAGGCATGGGATAGCACATTGCAAAAACACGAGGGCGATGGTCATTATTCAATTTTATATCATCAGCAAGGACGAATCATTGAGTTGATGCTGCAGTTTCATTTTCTCAACAAATACTTCACTCTCTGCTGCTGCTGCTATACTTGGGAGTTGGACACTTGGACTGCATGA

Network for GWHGAAZE030342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04006.13	Mpp10	17	99	1.20E-08
PF04006.13	Mpp10	163	429	7.30E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14559	MPP10	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0005634	cellular_component	nucleus
GO:0005732	cellular_component	small nucleolar ribonucleoprotein complex
GO:0034457	cellular_component	Mpp10 complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.288
	SRR3591706	second leaf	12.981
	SRR3591707	mature leaf	9.106
	SRR3591708	Shoot apex	31.791
	SRR3591709	Stem	20.140
	SRR3591710	White floral bud	16.773
	SRR3591711	White flower	23.350
	SRR3591712	Green floral bud	28.548
	SRR3591713	Yellow flower	13.989
SRP173429	SRR8316895	Juvenile bud stage	16.547
	SRR8316896	Juvenile bud stage	25.229
	SRR8316897	Juvenile bud stage	10.813
	SRR8316894	Third green stage	7.259
	SRR8316900	Third green stage	24.056
	SRR8316901	Third green stage	22.569
	SRR8316898	Complete white stage	0.713
	SRR8316899	Complete white stage	10.783
	SRR8316903	Complete white stage	3.051
	SRR8316902	Silver flowering stage	2.260
	SRR8316904	Silver flowering stage	3.916
	SRR8316905	Silver flowering stage	1.332
	SRR8316906	Gold flowering stage	6.542
	SRR8316907	Gold flowering stage	4.036
	SRR8316908	Gold flowering stage	6.581
SRP132670	SRR6706286	Control	16.025
	SRR6706287	Light intensity 50%	15.501
	SRR6706288	Light intensity 20%	15.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.252
	CNS0095593	Slightly white alabastrum(diploid) 2	18.085
	CNS0095594	Slightly white alabastrum(diploid) 3	22.984
	CNS0095595	Whole white alabastrum(diploid) 2	30.503
	CNS0095596	Whole white alabastrum(diploid) 3	32.421
	CNS0095597	Whole white alabastrum(diploid) 4	29.711
	CNS0095598	Silvery flower (diploied) 1	12.357
	CNS0095599	Silvery flower (diploied) 2	10.339
	CNS0095600	Silvery flower (diploied) 3	5.661
	CNS0095601	Golden flower (diploid) 1	8.547
	CNS0095602	Golden flower (diploid) 2	7.063
	CNS0095603	Golden flower (diploid) 3	5.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.607
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.240
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.432
	CNS0095610	Silvery flower (tetraploid) 1	9.629
	CNS0095611	Silvery flower (tetraploid) 2	7.531
	CNS0095612	Silvery flower (tetraploid) 3	3.759
	CNS0095613	Golden flower (tetraploid) 1	3.149
	CNS0095614	Golden flower (tetraploid) 2	7.749
	CNS0095615	Golden flower (tetraploid) 3	2.351
CRA001975	CRR073297	Stem 1	19.512
	CRR073298	Stem 2	19.603
	CRR073299	Stem 3	15.138
	CRR073300	Leaf 1	22.457
	CRR073301	Leaf 2	20.367
	CRR073302	Leaf 3	12.942
	CRR073303	Juvenile bud 1	16.468
	CRR073304	Juvenile bud 2	7.338
	CRR073305	Juvenile bud 3	10.656
	CRR073306	Third green 1	1.162
	CRR073307	Third green 2	0.488
	CRR073308	Third green 3	0.924
	CRR073309	Second white 1	0.794
	CRR073310	Second white 2	1.454
	CRR073311	Second white 3	1.224
	CRR073312	Silver flowering 1	1.363
	CRR073313	Silver flowering 2	0.805
	CRR073314	Silver flowering 3	2.711
	CRR073315	Gold flowering 1	9.427
	CRR073316	Gold flowering 2	10.996
	CRR073317	Gold flowering 3	4.314
	CRR073318	Tawny withering 1	31.029
	CRR073319	Tawny withering 2	26.975
	CRR073320	Tawny withering 3	32.734