Gene detail

Detail information of GWHGAAZE030349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006490742.1	2.83497E-87	PREDICTED: beta-glucosidase 44-like [Citrus sinensis]
COG	YP_005470321.1	1E-47	broad-specificity cellobiase
Swissprot	tr\|Q9LV33\|BGL44_ARATH	1E-79	Beta-glucosidase 44 (Precursor)
trEMBL	tr\|V4UFP7\|V4UFP7_9ROSI	1E-87	Uncharacterized protein {ECO:0000313\|EMBL:ESR64902.1}
TAIR10	AT3G18080.1	5E-63	B-S glucosidase 44

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42170267	42174511	+
GWHAAZE00000009	mRNA	42170267	42174511	+
GWHAAZE00000009	exon	42170267	42170489	+
GWHAAZE00000009	exon	42171622	42171680	+
GWHAAZE00000009	exon	42172000	42172075	+
GWHAAZE00000009	exon	42172260	42172331	+
GWHAAZE00000009	exon	42172428	42172515	+
GWHAAZE00000009	exon	42173657	42173709	+
GWHAAZE00000009	exon	42173828	42173859	+
GWHAAZE00000009	exon	42173960	42174062	+
GWHAAZE00000009	exon	42174231	42174511	+
GWHAAZE00000009	CDS	42170267	42170489	+
GWHAAZE00000009	CDS	42171622	42171680	+
GWHAAZE00000009	CDS	42172000	42172075	+
GWHAAZE00000009	CDS	42172260	42172331	+
GWHAAZE00000009	CDS	42172428	42172515	+
GWHAAZE00000009	CDS	42173657	42173709	+
GWHAAZE00000009	CDS	42173828	42173859	+
GWHAAZE00000009	CDS	42173960	42174062	+
GWHAAZE00000009	CDS	42174231	42174511	+

Transcript Sequence
>GWHTAAZE030383 ATGGTGAAAATGAGAAGGCCACTGCTGTTCTTGCTACTTACCTTGACAGCGATTCAGTGTGTCGCAGGTACAAATATAAGTTTAGACACGGGAGAGTTGAGCAGAGGGAGTTTTCCGGAGGGGTTCGTATTCGGAACGGCCACTTCCGCTTACCAGGTTGAAGGAATGGCCGACAAGGACGGTCGAGGCCCTAGTATTTGGGATGTCTTCATTAAATCTCCCGGACGTGAACCAAATAATGCTACAGGAGAGGTTTCGGTGGATGAGTATCACCGATACAAAGAAGATATTGATCTCATGGCAAAGCTTAACTTTGATGCCTACCGTTTCTCAATTTCATGGTCCAGGATATTCCCAAATGGAAGTGGTAAAGTAAATCAAAAGGGAGTTGCCTACTATAACAGATTGATCGACTACATGCTTGAAAAAGGCATTACCCCTTATGCTAATCTTAATCACTACGATCTTCCTCTAGCTCTTCAAGAGAGGTACAACGGATGGTTGGGTTGTGAAGTCATAGGAAAACCAAAAGAACTCGGCTACCAGCAGGACTGGAATGCTGGATTTGCTTATAATCGCCATGGAGTCCCTATTGGTCCTGCGGCATATTCAAGCTGGCTATACAATGTGCCATGGGGTCTATACAAAGCTGTAACCTACATCAAAGAACATTATGGGAACCCTACTGTGATTTTGGCTGAAAACGGTATGGATGATCCAGGTAATCTCACGCTTCCCAAGGGTTTGCACGATACAACGAGGATCAATTACTACAAGGGATATTTGACAAAGCTAAAGAAGACAGTCGATGAGGGGGCTAATGTGATAGGGTACTTTGCGTGGTCTTTGCTCGATAACTTTGAGTGGAGATTAGGGTACACTTCAAGGTTTGGCATAGTTTACGTTGATTTTAAAACTCTCAAGAGGTACCCAAAGATGTCGGCTTACTGGTTCAAGAAATTACTTGACCGAAGCGAGAAGCATTAA

Network for GWHGAAZE030349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	36	173	7.40E-60
PF00232.19	Glyco_hydro_1	197	324	1.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05350	bglB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.893
	SRR3591706	second leaf	81.167
	SRR3591707	mature leaf	45.213
	SRR3591708	Shoot apex	90.094
	SRR3591709	Stem	8.751
	SRR3591710	White floral bud	21.941
	SRR3591711	White flower	27.046
	SRR3591712	Green floral bud	14.291
	SRR3591713	Yellow flower	2.693
SRP173429	SRR8316895	Juvenile bud stage	45.136
	SRR8316896	Juvenile bud stage	43.707
	SRR8316897	Juvenile bud stage	33.052
	SRR8316894	Third green stage	19.952
	SRR8316900	Third green stage	28.162
	SRR8316901	Third green stage	21.442
	SRR8316898	Complete white stage	0.794
	SRR8316899	Complete white stage	23.449
	SRR8316903	Complete white stage	12.217
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.511
	SRR8316905	Silver flowering stage	0.098
	SRR8316906	Gold flowering stage	0.560
	SRR8316907	Gold flowering stage	0.226
	SRR8316908	Gold flowering stage	2.414
SRP132670	SRR6706286	Control	42.278
	SRR6706287	Light intensity 50%	31.507
	SRR6706288	Light intensity 20%	28.992
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.759
	CNS0095593	Slightly white alabastrum(diploid) 2	28.937
	CNS0095594	Slightly white alabastrum(diploid) 3	27.744
	CNS0095595	Whole white alabastrum(diploid) 2	23.208
	CNS0095596	Whole white alabastrum(diploid) 3	23.266
	CNS0095597	Whole white alabastrum(diploid) 4	13.423
	CNS0095598	Silvery flower (diploied) 1	97.281
	CNS0095599	Silvery flower (diploied) 2	57.976
	CNS0095600	Silvery flower (diploied) 3	16.084
	CNS0095601	Golden flower (diploid) 1	83.111
	CNS0095602	Golden flower (diploid) 2	50.430
	CNS0095603	Golden flower (diploid) 3	47.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.183
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.508
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.796
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.370
	CNS0095610	Silvery flower (tetraploid) 1	0.675
	CNS0095611	Silvery flower (tetraploid) 2	25.193
	CNS0095612	Silvery flower (tetraploid) 3	5.023
	CNS0095613	Golden flower (tetraploid) 1	0.563
	CNS0095614	Golden flower (tetraploid) 2	2.022
	CNS0095615	Golden flower (tetraploid) 3	0.433
CRA001975	CRR073297	Stem 1	106.853
	CRR073298	Stem 2	87.809
	CRR073299	Stem 3	117.975
	CRR073300	Leaf 1	23.069
	CRR073301	Leaf 2	28.018
	CRR073302	Leaf 3	40.950
	CRR073303	Juvenile bud 1	10.380
	CRR073304	Juvenile bud 2	2.510
	CRR073305	Juvenile bud 3	11.230
	CRR073306	Third green 1	0.512
	CRR073307	Third green 2	0.364
	CRR073308	Third green 3	0.300
	CRR073309	Second white 1	0.100
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.149
	CRR073312	Silver flowering 1	0.223
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.268
	CRR073315	Gold flowering 1	85.369
	CRR073316	Gold flowering 2	108.323
	CRR073317	Gold flowering 3	74.899
	CRR073318	Tawny withering 1	9.647
	CRR073319	Tawny withering 2	11.728
	CRR073320	Tawny withering 3	3.147