Gene detail

Detail information of GWHGAAZE030350

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98381.1	0	unnamed protein product [Coffea canephora]
COG	YP_003889651.1	3E-45	Serine/threonine-protein kinase-like domain-containing protein
Swissprot	tr\|O24076\|GBLP_MEDSA	0	Guanine nucleotide-binding protein subunit beta-like protein
trEMBL	tr\|A0A068TQ56\|A0A068TQ56_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98381.1}
TAIR10	AT3G18130.1	1E-159	receptor for activated C kinase 1C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42175585	42177587	-
GWHAAZE00000009	mRNA	42175585	42177587	-
GWHAAZE00000009	exon	42176700	42177587	-
GWHAAZE00000009	exon	42176009	42176050	-
GWHAAZE00000009	exon	42175585	42175686	-
GWHAAZE00000009	CDS	42176700	42177587	-
GWHAAZE00000009	CDS	42176009	42176050	-
GWHAAZE00000009	CDS	42175585	42175686	-

Transcript Sequence
>GWHTAAZE030384 ATGGCGGAATCTCTTGTACTAAGGGGAACAATGCGAGCCCACACGGACTGGGTCACCGCAATCGCCACCCCAATCGATAACTCCGACATGATCGTCACCTCCTCCCGCGACAAATCCCTCATCCTCTGGCAACTCACCAAGGAGGACAAAACCTACGGCGTCCCTCGCCGCCGGTTAACCGGGCACTCTCACTTCGTTCAGGACGTGGTCCTCTCCTCCGATGGACAGTTCGCCCTCTCCGGCAGCTGGGACGGCGAGCTCCGCCTCTGGGACCTCGCCACTGGCGTCACCGCCCGTCGCTTCGTTGGCCACACCAAGGACGTTCTTTCCGTCGCATTTTCCAACGACAACCGTCAGATCGTCTCGGCTTCTCGTGACCGTTCGATCAAACTCTGGAACACACTCGGAGAGTGCAAGTACACAATCCAAGACGGCGAAGCTCACTCCGATTGGGTTAGTTGCGTTCGATTTAGCCCTAATACTTTACAGCCCACAATTGTGTCATCTTCTTGGGATAGGACAGTGAAGATCTGGAATTTGACTAATTGTAAGCTTAGGTCTACTTTGGCTGGTCACGGTGGGTACGTGAACACTGTGGCGGTTTCGCCTGATGGTTCGTTGTGTGCGAGTGGAGGGAAAGATGGGGTGATATTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTGTATTCGCTGGACGCTGGTTCAATTATTCATGCTTTGTGTTTTAGCCCTAACAGGTATTGGCTATGTGCTGCTACTGAGGCGAGTATAAAGATATGGGATTTGGAGAGCAAGAGTATTGTGGTGGATCTTAGGGTTGATCTTAAGCAGGAGTCTGAAATGGCTGCTGAGGGTACTGCTACGCAAACCAATGCTGGAAAGAACAAGGTGATCTTGAGGCCCTTGAAGAACATGGTTGCAGCCTTGCCTGTTATATACTGCACAAGCCTTGCCTGGAGTGCTGATGGAAGCACACTGTTCAGTGGTTATACAGACGGTGTAGTCAGAGTTTGGGGTATTGGTCGTTACTAG

Network for GWHGAAZE030350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	9	43	0.028
PF00400.33	WD40	55	91	4.10E-07
PF00400.33	WD40	99	133	2.90E-07
PF00400.33	WD40	146	179	4.00E-06
PF00400.33	WD40	186	221	1.80E-07
PF00400.33	WD40	227	261	0.002
PF00400.33	WD40	315	338	0.00096

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	254.411
	SRR3591706	second leaf	158.460
	SRR3591707	mature leaf	61.200
	SRR3591708	Shoot apex	358.459
	SRR3591709	Stem	110.928
	SRR3591710	White floral bud	125.011
	SRR3591711	White flower	166.705
	SRR3591712	Green floral bud	273.032
	SRR3591713	Yellow flower	96.287
SRP173429	SRR8316895	Juvenile bud stage	188.380
	SRR8316896	Juvenile bud stage	247.635
	SRR8316897	Juvenile bud stage	135.026
	SRR8316894	Third green stage	96.631
	SRR8316900	Third green stage	274.646
	SRR8316901	Third green stage	255.990
	SRR8316898	Complete white stage	40.664
	SRR8316899	Complete white stage	210.008
	SRR8316903	Complete white stage	63.200
	SRR8316902	Silver flowering stage	42.276
	SRR8316904	Silver flowering stage	42.243
	SRR8316905	Silver flowering stage	21.871
	SRR8316906	Gold flowering stage	62.654
	SRR8316907	Gold flowering stage	65.198
	SRR8316908	Gold flowering stage	95.492
SRP132670	SRR6706286	Control	277.102
	SRR6706287	Light intensity 50%	304.577
	SRR6706288	Light intensity 20%	330.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	219.004
	CNS0095593	Slightly white alabastrum(diploid) 2	235.257
	CNS0095594	Slightly white alabastrum(diploid) 3	217.342
	CNS0095595	Whole white alabastrum(diploid) 2	161.288
	CNS0095596	Whole white alabastrum(diploid) 3	187.270
	CNS0095597	Whole white alabastrum(diploid) 4	121.088
	CNS0095598	Silvery flower (diploied) 1	112.284
	CNS0095599	Silvery flower (diploied) 2	102.932
	CNS0095600	Silvery flower (diploied) 3	92.728
	CNS0095601	Golden flower (diploid) 1	64.087
	CNS0095602	Golden flower (diploid) 2	76.940
	CNS0095603	Golden flower (diploid) 3	76.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	210.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	199.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	299.223
	CNS0095607	Whole white alabastrum(tetraploid) 1	89.380
	CNS0095608	Whole white alabastrum(tetraploid) 2	78.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	226.662
	CNS0095610	Silvery flower (tetraploid) 1	88.029
	CNS0095611	Silvery flower (tetraploid) 2	78.004
	CNS0095612	Silvery flower (tetraploid) 3	56.079
	CNS0095613	Golden flower (tetraploid) 1	37.380
	CNS0095614	Golden flower (tetraploid) 2	68.444
	CNS0095615	Golden flower (tetraploid) 3	41.467
CRA001975	CRR073297	Stem 1	399.376
	CRR073298	Stem 2	380.414
	CRR073299	Stem 3	514.575
	CRR073300	Leaf 1	327.703
	CRR073301	Leaf 2	390.821
	CRR073302	Leaf 3	509.698
	CRR073303	Juvenile bud 1	379.673
	CRR073304	Juvenile bud 2	332.273
	CRR073305	Juvenile bud 3	357.098
	CRR073306	Third green 1	43.410
	CRR073307	Third green 2	47.835
	CRR073308	Third green 3	50.807
	CRR073309	Second white 1	64.242
	CRR073310	Second white 2	53.838
	CRR073311	Second white 3	33.550
	CRR073312	Silver flowering 1	56.192
	CRR073313	Silver flowering 2	83.048
	CRR073314	Silver flowering 3	73.477
	CRR073315	Gold flowering 1	135.984
	CRR073316	Gold flowering 2	168.092
	CRR073317	Gold flowering 3	139.930
	CRR073318	Tawny withering 1	378.023
	CRR073319	Tawny withering 2	256.247
	CRR073320	Tawny withering 3	410.008