Gene detail

Detail information of GWHGAAZE030386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282578.1	2.4995E-144	PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera]
Swissprot	tr\|Q8RWD0\|COL16_ARATH	1E-95	Zinc finger protein CONSTANS-LIKE 16
trEMBL	tr\|D7T949\|D7T949_VITVI	9E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27020.3}
TAIR10	AT1G25440.1	1E-80	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42664923	42666493	-
GWHAAZE00000009	mRNA	42664923	42666493	-
GWHAAZE00000009	exon	42665492	42666493	-
GWHAAZE00000009	exon	42664923	42665299	-
GWHAAZE00000009	CDS	42665492	42666493	-
GWHAAZE00000009	CDS	42665039	42665299	-
GWHAAZE00000009	three_prime_UTR	42664923	42665038	-

Transcript Sequence
>GWHTAAZE030420 ATGATCATCCATAAAAAAGCTGCAAACGCAGTCGGAGGAAAGACGGCCAGAGCTTGCGATGCGTGTTTACGCAAACGAGCTCGATGGTATTGCGCTGCAGACGACGCGTTCCTCTGCCAAGGCTGCGATGCATCGGTCCATTCCGCCAACCAACTGGCAGGTCGACATGACCGGGTCCGACTCGGTACAGCTTCACTTAAGCTCAAGATCCCCTCACAAACAATAGAAGAAACAAACTCTCCCTCTTCCTCTGTTTGGCACCAGGGGTTCACACGCAAAGCGAGGACCCCAAGAAACCGAAAGGACAAGAGGGAAAGTATAGGTATTTTTCCTCTTGTCCCAGAGATGGGTAGCGAAGAAGTATCTTTTGATGACAATGAAGAACAGCTTCTTTATTGCGTCCCTGTATTTGATCCTTTTTCCATTGAACTCTGTAATGTTTCCAATGAAGTCGAACCACAAAATATTTTGGCCACTGATAATAGCGGACACAACAAACCATGTGAATTGGGTAATATTCACGGGCTTCTTCCATCAGACATGGAGCTTGTGGAGTTTGCAGCTGATGTGGAAAGCTTACTGGGGAAGGGGATCGACGAGGGTTCGTGTGGAATTGAAGGATTGGGCCTAATTGATTGCAAAGAAGAAGATGGAATATTGGGTGTTTGTTTTGAAAGGAATAGTAGAGTGAAAGTTGAAGAAGAAGAAGAAGAGGTGGGTGGTATAATAGCTTGTCATTTGGATCCGGGGTTCGATTTGACAAGAGAAACGATAGATTGGAACTTCGATTATGAGTCACCGGCAACCTGTGAGGAGGAAGTGTGCGAAAAGGCAGTGGTTGGAGCAGATACAAAGGTGTTCAAGTGCGAAAATGGAGAGAGAAACATCCTTTTGAAGCTTAATTATGATAATGTGATTACTAATTGGAACAACCAAGGACGTTGCCCATGGATAGATGGAATCCGACCAGAGTTCAGCGCAGACTACTGGCCTGAGTTCATGGGCATGGTGGGATCTGCGGGGGTTGATAATGGTGGAAAGGTCGGGAGTAGTGATGGAGGGAGAGAAGCAAGAGTGACAAGGTACAGAGAGAAGAGACGGAACAGATTGTTCTCAAAGAAGATAAGGTATGAGGTGAGGAAACTTAATGCAGAGAAGAGGCCTAGAATGAAGGGTCGCTTTGTTAAAAGGGCTTCCTCTTTTGGAGGAGCACCACCAGCACTTACAGCTGCTGTGTCACCTTACAAGCTGGTGAACAAATAGTAGTAGAACATTTTAACCGTCAACCGCCAAGCTCGCTTCCTTTTTTCTTGTCAAATTTGGAATATGTGTAAAATGTTACAGAAGATTTTTCTTAATTTGATTTGTGTGCGGTTAAA

Network for GWHGAAZE030386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	16	59	3.80E-07
PF06203.15	CCT	355	397	1.20E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.637
	SRR3591706	second leaf	19.645
	SRR3591707	mature leaf	43.914
	SRR3591708	Shoot apex	2.040
	SRR3591709	Stem	0.258
	SRR3591710	White floral bud	0.405
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.118
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.047
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.963
	SRR8316901	Third green stage	0.515
	SRR8316898	Complete white stage	0.120
	SRR8316899	Complete white stage	2.936
	SRR8316903	Complete white stage	0.288
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.735
	SRR6706287	Light intensity 50%	0.878
	SRR6706288	Light intensity 20%	1.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.085
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.062
	CNS0095595	Whole white alabastrum(diploid) 2	0.325
	CNS0095596	Whole white alabastrum(diploid) 3	0.384
	CNS0095597	Whole white alabastrum(diploid) 4	1.330
	CNS0095598	Silvery flower (diploied) 1	0.149
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.191
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.028
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.176
	CRR073298	Stem 2	0.108
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.842
	CRR073301	Leaf 2	0.586
	CRR073302	Leaf 3	0.723
	CRR073303	Juvenile bud 1	0.582
	CRR073304	Juvenile bud 2	0.504
	CRR073305	Juvenile bud 3	1.032
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.985
	CRR073316	Gold flowering 2	6.081
	CRR073317	Gold flowering 3	5.353
	CRR073318	Tawny withering 1	3.144
	CRR073319	Tawny withering 2	0.790
	CRR073320	Tawny withering 3	0.579