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Detail information of GWHGAAZE030397
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
CDP10197.1
0
unnamed protein product [Coffea canephora]
COG
YP_003266114.1
3E-40
actin/actin family protein
Swissprot
tr|Q84M92|ARP4_ARATH
0
Actin-related protein 4
trEMBL
tr|A0A068UPK1|A0A068UPK1_COFCA
0
Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313|EMBL:CDP10197.1}
TAIR10
AT1G18450.1
0
actin-related protein 4
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000009
gene
42883381
42892508
+
GWHAAZE00000009
mRNA
42883381
42892508
+
GWHAAZE00000009
exon
42883381
42883393
+
GWHAAZE00000009
exon
42883501
42883592
+
GWHAAZE00000009
exon
42884834
42884980
+
GWHAAZE00000009
exon
42885072
42885145
+
GWHAAZE00000009
exon
42885451
42885531
+
GWHAAZE00000009
exon
42886416
42886476
+
GWHAAZE00000009
exon
42886590
42886639
+
GWHAAZE00000009
exon
42886824
42886878
+
GWHAAZE00000009
exon
42887270
42887347
+
GWHAAZE00000009
exon
42887448
42887501
+
GWHAAZE00000009
exon
42888975
42889028
+
GWHAAZE00000009
exon
42889111
42889171
+
GWHAAZE00000009
exon
42890187
42890238
+
GWHAAZE00000009
exon
42890378
42890444
+
GWHAAZE00000009
exon
42891004
42891066
+
GWHAAZE00000009
exon
42891174
42891236
+
GWHAAZE00000009
exon
42891463
42891525
+
GWHAAZE00000009
exon
42891614
42891678
+
GWHAAZE00000009
exon
42891752
42891820
+
GWHAAZE00000009
exon
42892194
42892508
+
GWHAAZE00000009
CDS
42883381
42883393
+
GWHAAZE00000009
CDS
42883501
42883592
+
GWHAAZE00000009
CDS
42884834
42884980
+
GWHAAZE00000009
CDS
42885072
42885145
+
GWHAAZE00000009
CDS
42885451
42885531
+
GWHAAZE00000009
CDS
42886416
42886476
+
GWHAAZE00000009
CDS
42886590
42886639
+
GWHAAZE00000009
CDS
42886824
42886878
+
GWHAAZE00000009
CDS
42887270
42887347
+
GWHAAZE00000009
CDS
42887448
42887501
+
GWHAAZE00000009
CDS
42888975
42889028
+
GWHAAZE00000009
CDS
42889111
42889171
+
GWHAAZE00000009
CDS
42890187
42890238
+
GWHAAZE00000009
CDS
42890378
42890444
+
GWHAAZE00000009
CDS
42891004
42891066
+
GWHAAZE00000009
CDS
42891174
42891236
+
GWHAAZE00000009
CDS
42891463
42891525
+
GWHAAZE00000009
CDS
42891614
42891678
+
GWHAAZE00000009
CDS
42891752
42891820
+
GWHAAZE00000009
CDS
42892194
42892239
+
GWHAAZE00000009
three_prime_UTR
42892240
42892508
+
Transcript Sequence
>GWHTAAZE030431 ATGTACGGAGGCGATGAAGTATCTGCTATAGTTGTGGATTTGGGTTCTCACACTTGTAAAGCTGGTTATGCTGGCGAAGATGCTCCCAAAGCTGTTTTCCCATCTGTGGTTGGAGCAATTGATCAAATGGAAGTTGATGACCCTGATAATCCAGAGAAGAACGCTGCATCTGCGCTAGATCCTAAATCCAAGGGAAAACGCAAATTGTACGTAGGATCTCAAGCCTTGGGATACCGCCGGGATCATATGGAGGTACTGCCAAGCATAAAGGATGGAGTTGTTGCTGAATGGGATATTGTTGAAAGCATATGGGACCATGCTTTTAGGGAATGCCTATTGGTTGATCCTAAAGAACATCCAATGCTACTAGCAGAACCATCTTCTAACACTCAACAACAAAGAGAAAAGGCAGCAGAGATCATGTTTGAGAAATACCAAGTTCCTGCACTATTTTTGGCCAAAAATGCTGTTCTCACATCTTTTGCATCAGGCCGTGCTACCTCTTTAGTTGTTGATAGTGGCGGAGGATCAACAACCATTGCTCCTGTACATGATGGTTATGTTCTTCAAAAGGCTGTGGCATCATCTCCAATTGGGGGTGAATTTCTCACTGATTGCCTGATTAAAAGCTTGGAAAGTAAAGGACTAAGTATAAAACCTCGATATTCATTTAAACGGAAGGAAATCCGGCCTGGAGAGTTTCAGACAGTGGATCTTGATTTTCCAAACACAAGTGAAAGTTACAAACTCTACTCCCAGAGGGTCATTGCTAGTGATATCAAGGAATGCGTATGCCGAGCCCCAGATACTCCATATGATGAGACTTCATATTCAAACATCCCAATGACACCTTATGAGCTTCCTGACGGGCAGACAATAGAAATTGGATCTGACAGATTCAAGATACCTGATGTTCTATTCAATCCATCTTTGGTTCAGACTATTCCTGGTATGGAAAGTTTTGTTGAGACTGCTTCTTCAGCTCGTGGCCTGCCACAAATGGTTATAGAGAGCATAAATAAGTGTGATGTTGACATTCGGAGAGAACTATTTAGCAGTATATTGCTTGCTGGTGGCACAGCTTCAATGCAGCAACTGAAAGAACGTCTTGAGAAAGACTTGCTAGAGGAGTCTCCGCAAGCAGCTAGAGTTAAAGTATTGGCAAGTGGAAATGCAACAGAAAGGAGATTCAGTGTTTGGATAGGAGGGAGCATATTGGCATCTCTTGGTTCCTTCCAACAGATGTGGTTTTCCAAGTCCGAGTTCGAAGAACACGGGGCTGCCTATATTCAAAGAAAATGTCCTTAAGATAATTGTCTTCTTGGCAAAATGGCAGGCAGGTTGTATCTAGACAATTAATTAACTTATTATTAAATGAGCTGACTTATGTTAGAGAATCTAGTCCCAAAATGATGTGCCCATACTTTCGTTTGAAGGGATCCTGATTCTTATGTGCCCCATCATGTCAATGTTCAGACGCATAGAAAGTTCGAAAATTGCGAGTAGTTTCACTCTGTACAATTATTTGTGTGATTTTGCTGTATTTGCGCGTTTAGAATAGGTCAGTATCTTGCTAT
Network for GWHGAAZE030397
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00022.20
Actin
4
434
1.00E-144
Protein Sequence
>GWHPAAZE030415 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMEVDDPDNPEKNAASALDPKSKGKRKLYVGSQALGYRRDHMEVLPSIKDGVVAEWDIVESIWDHAFRECLLVDPKEHPMLLAEPSSNTQQQREKAAEIMFEKYQVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVLQKAVASSPIGGEFLTDCLIKSLESKGLSIKPRYSFKRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDETSYSNIPMTPYELPDGQTIEIGSDRFKIPDVLFNPSLVQTIPGMESFVETASSARGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEFEEHGAAYIQRKCP
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K11340
ACTL6A, INO80K
Thermogenesis
map04714
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
26.142
SRR3591706
second leaf
13.941
SRR3591707
mature leaf
14.763
SRR3591708
Shoot apex
55.432
SRR3591709
Stem
20.165
SRR3591710
White floral bud
20.108
SRR3591711
White flower
37.382
SRR3591712
Green floral bud
22.687
SRR3591713
Yellow flower
28.420
SRP173429
SRR8316895
Juvenile bud stage
20.342
SRR8316896
Juvenile bud stage
24.883
SRR8316897
Juvenile bud stage
12.152
SRR8316894
Third green stage
9.427
SRR8316900
Third green stage
24.974
SRR8316901
Third green stage
21.115
SRR8316898
Complete white stage
5.734
SRR8316899
Complete white stage
31.532
SRR8316903
Complete white stage
9.177
SRR8316902
Silver flowering stage
14.546
SRR8316904
Silver flowering stage
16.126
SRR8316905
Silver flowering stage
9.245
SRR8316906
Gold flowering stage
35.894
SRR8316907
Gold flowering stage
30.774
SRR8316908
Gold flowering stage
33.866
SRP132670
SRR6706286
Control
14.239
SRR6706287
Light intensity 50%
15.828
SRR6706288
Light intensity 20%
17.740
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
20.530
CNS0095593
Slightly white alabastrum(diploid) 2
21.150
CNS0095594
Slightly white alabastrum(diploid) 3
20.582
CNS0095595
Whole white alabastrum(diploid) 2
17.250
CNS0095596
Whole white alabastrum(diploid) 3
12.668
CNS0095597
Whole white alabastrum(diploid) 4
15.727
CNS0095598
Silvery flower (diploied) 1
23.672
CNS0095599
Silvery flower (diploied) 2
17.667
CNS0095600
Silvery flower (diploied) 3
17.913
CNS0095601
Golden flower (diploid) 1
18.198
CNS0095602
Golden flower (diploid) 2
18.272
CNS0095603
Golden flower (diploid) 3
17.149
CNS0095604
Slightly white alabastrum(tetraploid) 1
22.414
CNS0095605
Slightly white alabastrum(tetraploid) 2
17.857
CNS0095606
Slightly white alabastrum(tetraploid) 3
38.738
CNS0095607
Whole white alabastrum(tetraploid) 1
11.289
CNS0095608
Whole white alabastrum(tetraploid) 2
9.153
CNS0095609
Whole white alabastrum(tetraploid) 3
19.530
CNS0095610
Silvery flower (tetraploid) 1
24.320
CNS0095611
Silvery flower (tetraploid) 2
20.636
CNS0095612
Silvery flower (tetraploid) 3
17.724
CNS0095613
Golden flower (tetraploid) 1
17.302
CNS0095614
Golden flower (tetraploid) 2
20.212
CNS0095615
Golden flower (tetraploid) 3
14.347
CRA001975
CRR073297
Stem 1
23.677
CRR073298
Stem 2
24.315
CRR073299
Stem 3
24.374
CRR073300
Leaf 1
16.045
CRR073301
Leaf 2
16.069
CRR073302
Leaf 3
16.355
CRR073303
Juvenile bud 1
11.817
CRR073304
Juvenile bud 2
9.102
CRR073305
Juvenile bud 3
20.297
CRR073306
Third green 1
2.026
CRR073307
Third green 2
2.324
CRR073308
Third green 3
2.974
CRR073309
Second white 1
13.491
CRR073310
Second white 2
9.002
CRR073311
Second white 3
11.182
CRR073312
Silver flowering 1
8.717
CRR073313
Silver flowering 2
7.154
CRR073314
Silver flowering 3
6.399
CRR073315
Gold flowering 1
13.632
CRR073316
Gold flowering 2
21.882
CRR073317
Gold flowering 3
18.232
CRR073318
Tawny withering 1
16.119
CRR073319
Tawny withering 2
21.067
CRR073320
Tawny withering 3
19.942