Detail information of GWHGAAZE030397


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10197.10unnamed protein product [Coffea canephora]
COGYP_003266114.13E-40actin/actin family protein
Swissprottr|Q84M92|ARP4_ARATH0Actin-related protein 4
trEMBLtr|A0A068UPK1|A0A068UPK1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313|EMBL:CDP10197.1}
TAIR10AT1G18450.10actin-related protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4288338142892508+
GWHAAZE00000009mRNA4288338142892508+
GWHAAZE00000009exon4288338142883393+
GWHAAZE00000009exon4288350142883592+
GWHAAZE00000009exon4288483442884980+
GWHAAZE00000009exon4288507242885145+
GWHAAZE00000009exon4288545142885531+
GWHAAZE00000009exon4288641642886476+
GWHAAZE00000009exon4288659042886639+
GWHAAZE00000009exon4288682442886878+
GWHAAZE00000009exon4288727042887347+
GWHAAZE00000009exon4288744842887501+
GWHAAZE00000009exon4288897542889028+
GWHAAZE00000009exon4288911142889171+
GWHAAZE00000009exon4289018742890238+
GWHAAZE00000009exon4289037842890444+
GWHAAZE00000009exon4289100442891066+
GWHAAZE00000009exon4289117442891236+
GWHAAZE00000009exon4289146342891525+
GWHAAZE00000009exon4289161442891678+
GWHAAZE00000009exon4289175242891820+
GWHAAZE00000009exon4289219442892508+
GWHAAZE00000009CDS4288338142883393+
GWHAAZE00000009CDS4288350142883592+
GWHAAZE00000009CDS4288483442884980+
GWHAAZE00000009CDS4288507242885145+
GWHAAZE00000009CDS4288545142885531+
GWHAAZE00000009CDS4288641642886476+
GWHAAZE00000009CDS4288659042886639+
GWHAAZE00000009CDS4288682442886878+
GWHAAZE00000009CDS4288727042887347+
GWHAAZE00000009CDS4288744842887501+
GWHAAZE00000009CDS4288897542889028+
GWHAAZE00000009CDS4288911142889171+
GWHAAZE00000009CDS4289018742890238+
GWHAAZE00000009CDS4289037842890444+
GWHAAZE00000009CDS4289100442891066+
GWHAAZE00000009CDS4289117442891236+
GWHAAZE00000009CDS4289146342891525+
GWHAAZE00000009CDS4289161442891678+
GWHAAZE00000009CDS4289175242891820+
GWHAAZE00000009CDS4289219442892239+
GWHAAZE00000009three_prime_UTR4289224042892508+
Transcript Sequence

Network for GWHGAAZE030397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.20Actin44341.00E-144
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11340ACTL6A, INO80K Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.142
SRR3591706second leaf13.941
SRR3591707mature leaf14.763
SRR3591708Shoot apex55.432
SRR3591709Stem20.165
SRR3591710White floral bud20.108
SRR3591711White flower37.382
SRR3591712Green floral bud22.687
SRR3591713Yellow flower28.420
SRP173429 SRR8316895Juvenile bud stage 20.342
SRR8316896Juvenile bud stage 24.883
SRR8316897Juvenile bud stage 12.152
SRR8316894Third green stage 9.427
SRR8316900Third green stage 24.974
SRR8316901Third green stage 21.115
SRR8316898Complete white stage 5.734
SRR8316899Complete white stage 31.532
SRR8316903Complete white stage 9.177
SRR8316902Silver flowering stage14.546
SRR8316904Silver flowering stage16.126
SRR8316905Silver flowering stage9.245
SRR8316906Gold flowering stage 35.894
SRR8316907Gold flowering stage 30.774
SRR8316908Gold flowering stage 33.866
SRP132670SRR6706286Control14.239
SRR6706287Light intensity 50%15.828
SRR6706288Light intensity 20%17.740
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.530
CNS0095593Slightly white alabastrum(diploid) 221.150
CNS0095594Slightly white alabastrum(diploid) 320.582
CNS0095595Whole white alabastrum(diploid) 217.250
CNS0095596Whole white alabastrum(diploid) 312.668
CNS0095597Whole white alabastrum(diploid) 415.727
CNS0095598Silvery flower (diploied) 123.672
CNS0095599Silvery flower (diploied) 217.667
CNS0095600Silvery flower (diploied) 317.913
CNS0095601Golden flower (diploid) 118.198
CNS0095602Golden flower (diploid) 218.272
CNS0095603Golden flower (diploid) 317.149
CNS0095604Slightly white alabastrum(tetraploid) 122.414
CNS0095605Slightly white alabastrum(tetraploid) 217.857
CNS0095606Slightly white alabastrum(tetraploid) 338.738
CNS0095607Whole white alabastrum(tetraploid) 111.289
CNS0095608Whole white alabastrum(tetraploid) 29.153
CNS0095609Whole white alabastrum(tetraploid) 319.530
CNS0095610Silvery flower (tetraploid) 124.320
CNS0095611Silvery flower (tetraploid) 220.636
CNS0095612Silvery flower (tetraploid) 317.724
CNS0095613Golden flower (tetraploid) 117.302
CNS0095614Golden flower (tetraploid) 220.212
CNS0095615Golden flower (tetraploid) 314.347
CRA001975CRR073297Stem 123.677
CRR073298Stem 224.315
CRR073299Stem 324.374
CRR073300Leaf 116.045
CRR073301Leaf 216.069
CRR073302Leaf 316.355
CRR073303Juvenile bud 111.817
CRR073304Juvenile bud 29.102
CRR073305Juvenile bud 320.297
CRR073306Third green 12.026
CRR073307Third green 22.324
CRR073308Third green 32.974
CRR073309Second white 113.491
CRR073310Second white 29.002
CRR073311Second white 311.182
CRR073312Silver flowering 18.717
CRR073313Silver flowering 27.154
CRR073314Silver flowering 36.399
CRR073315Gold flowering 113.632
CRR073316Gold flowering 221.882
CRR073317Gold flowering 318.232
CRR073318Tawny withering 116.119
CRR073319Tawny withering 221.067
CRR073320Tawny withering 319.942