Gene detail

Detail information of GWHGAAZE030401

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663567.1	1.3748E-167	PREDICTED: uncharacterized protein LOC100242396 isoform X1 [Vitis vinifera]
trEMBL	tr\|D7SIV9\|D7SIV9_VITVI	5E-168	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15420.3}
TAIR10	AT5G38690.1	2E-64	Zinc-finger domain of monoamine-oxidase A repressor R1 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	42913511	42923808	+
GWHAAZE00000009	mRNA	42913511	42923808	+
GWHAAZE00000009	exon	42913511	42913573	+
GWHAAZE00000009	exon	42918872	42918946	+
GWHAAZE00000009	exon	42919089	42919190	+
GWHAAZE00000009	exon	42919452	42919558	+
GWHAAZE00000009	exon	42919668	42919935	+
GWHAAZE00000009	exon	42920036	42920566	+
GWHAAZE00000009	exon	42920848	42920990	+
GWHAAZE00000009	exon	42921245	42921439	+
GWHAAZE00000009	exon	42921527	42921620	+
GWHAAZE00000009	exon	42921717	42921885	+
GWHAAZE00000009	exon	42922089	42922211	+
GWHAAZE00000009	exon	42922294	42922390	+
GWHAAZE00000009	exon	42922920	42922960	+
GWHAAZE00000009	exon	42923557	42923808	+
GWHAAZE00000009	CDS	42913511	42913573	+
GWHAAZE00000009	CDS	42918872	42918946	+
GWHAAZE00000009	CDS	42919089	42919190	+
GWHAAZE00000009	CDS	42919452	42919558	+
GWHAAZE00000009	CDS	42919668	42919935	+
GWHAAZE00000009	CDS	42920036	42920566	+
GWHAAZE00000009	CDS	42920848	42920990	+
GWHAAZE00000009	CDS	42921245	42921439	+
GWHAAZE00000009	CDS	42921527	42921620	+
GWHAAZE00000009	CDS	42921717	42921885	+
GWHAAZE00000009	CDS	42922089	42922211	+
GWHAAZE00000009	CDS	42922294	42922390	+
GWHAAZE00000009	CDS	42922920	42922960	+
GWHAAZE00000009	CDS	42923557	42923645	+
GWHAAZE00000009	three_prime_UTR	42923646	42923808	+

Transcript Sequence
>GWHTAAZE030435 ATGATAGGAGAAAGAAGAAGATTTTTGCTTGTGAGAGCTAGAGAATTGAAGGCTAAGGGCCGGCGGCTCAAGTCTCCCGGTGTTCGGGTCATCGGAGCTAGAATCTACGATTCTGAGCATGGCAAGACCTGTCACCAGACAAAAGACCATGGATTTTGTGGTTTCGTGCAAGAGTCAGACTCAGAACAAGAACAACAAGCAATGTACCTTCCGTTTCTGTCACAAATGCCTCTTAAACAGGCTGCTTGGTTTGAGGCCAGATATGGAGAAAAAGCAGAAGAGTTAGCCGAATTGGTTGATTGGATATGTCCCAAATGCAGAGGCATTTGCAATTGCAGTTTCTGCATGAAGAAGCGGGGTTTTCACCCTACTGGGATCCTTGTGCATACTGCAAAGGCAAATGGGTTTTCTTCAGTCTCAGATATGTTACTCATAGATAACTCTGCGAAGGCTGAAACGGAGGAGGGTTCCCCATCAAAAAAGAGGGCTGCAAAATCAGAAAACGGAGATTTGGAACTGAAAAGGTCAAGGAAGGACGACAATAAGGAGCAACAATCTAGAGGGATTATAAAAGATGCTGGTGCTTCATCAAAAAAGGCTACTGCTTTGGCCAAGGAGCCTGCAGTGGGTCCAGAAAAAGCACAGAAAAATGTGACTGGTTTGGACGGAAATAGTGATATGAAATCGCAACCGGAGTCTTTGAAAACAAAGACCAATAAAAAGGATACGAAAAATACCAATTTGGAAGGACTAAGAGAGTCCAATGAAATTGACGATTCATCGGAAACCAGTATGAACAATGGTGCACCTGCAGAAAACATTACTACTAAGAATGACATCGAGTTAATTAAGACAAATTCTGAAGCACTAATGCCGAATAAAGTTTCTACGAGGTCAATCAAGATAGAGGATAATGAGTCAGAAGTGCCCAGTAACATCAATGTGAATACTACTGCAGCCAAAAGTAGGATAGTTGATGAATTTGACCAGTTTACAAAGACTGAGGAGGTCCAAGGCAAGGATTCTGTTGCTGAGATCCCACTGCCTCAGGGTACTGAATTAACCAACGTAGCTAACATTGACATGCCTGCAGAGGATGTCGGGCATGCTTTGCAATTCCTAGAGTTTTGTGAAGCATTTGGAAAGGTTCTTGATCTAAAGAAAGGGCAGCCTGAAATGTTACTTCGAGATTTAACATGTGACCGAAGATCTCGTCGAAAAGATGAATCGTCAGTTGTTCAGTTTCATATCAAATTGCTTTCCATGATACAAGAGACTTCAGGAAAAGAATTTTCCTCCTCAAAAGCTACAGTCAGAAATCCGTGGCTGGAAGGTCTTAGAAAATGCATCTCTGAATCCCAGGATCCATCAAAAGAATCACTCTTGGGTTTTCTTGATGTCGGGGTTGATGGATATGAGAAGTTAGATACTTCAAAAAAGCTCAGACTCTTAACTTTCTTATGTGACGAAGCTCTTGGAACGCCAGTTCTAAGGAGTTGGATTGATGAACAAAACTCAGAATATGTCAAAGAGGTGAAGAAAGCAAAAGAAACCATCCTTCCTGCTCAAAAAGAGAAGGAGAAGAACATGAAAAGGAAAGTTCAGAATGAGGTGGCTAGAGCTATAATCATGAATAATGGTGTTCCTCTTTCCATTGCTGAACATGAGAATCTTGTTTTCAAAATAAGGGCTGAAGCTGCTCAAACTCTTGCGGAGACACTAGAAGAAATAGAGATGCTAACGAAGACATTGCCCAAAGAAACCCCGAGATCAGATGCCGTTAGATCAGAGCCTATACTTTTTGATGCAAGTGGTCGTATATTTTGGAAATTGAGAGGCTACGATGGTAGCTCGGATATTCTTCTTCAAGATATCGGGAGTGGAGAGCTGGTTACTTGTAAGGACCGATGGTTTGCCTATGATGTTCAAGAAAAGGAAATGGTTGAAAAGTATCTTTCATCAAAAAGGTATTGGTTTGGTGGCCACGAGAAAGATACTAGCTATCTTGGAATCTTTGAAAATGGAACAGGATATTGTTCTACAATTCTAGCCCAACTTGCAAGCGGATGTTTATTTGAAATTGGCCAATTCCTTTAGTACTTTCTTGGGTGCACAGCTTCTTGTTCAACATTTGTGTAGGGCATCCAATTGCCATTTTTTCTGGTTCCTGAACTCCTTTTATTTTTTTCGAAAAAACTACAGTTCATATAGATGTGTATTTAAATATTTATAGGACATGCTCACTTTTGCTGTGAAAGTG

Network for GWHGAAZE030401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10497.10	zf-4CXXC_R1	36	143	1.40E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.853
	SRR3591706	second leaf	2.596
	SRR3591707	mature leaf	0.370
	SRR3591708	Shoot apex	13.516
	SRR3591709	Stem	4.843
	SRR3591710	White floral bud	4.109
	SRR3591711	White flower	2.871
	SRR3591712	Green floral bud	4.791
	SRR3591713	Yellow flower	0.763
SRP173429	SRR8316895	Juvenile bud stage	5.531
	SRR8316896	Juvenile bud stage	10.331
	SRR8316897	Juvenile bud stage	3.960
	SRR8316894	Third green stage	3.837
	SRR8316900	Third green stage	5.403
	SRR8316901	Third green stage	5.963
	SRR8316898	Complete white stage	0.657
	SRR8316899	Complete white stage	5.383
	SRR8316903	Complete white stage	1.372
	SRR8316902	Silver flowering stage	0.340
	SRR8316904	Silver flowering stage	0.630
	SRR8316905	Silver flowering stage	0.202
	SRR8316906	Gold flowering stage	0.712
	SRR8316907	Gold flowering stage	0.887
	SRR8316908	Gold flowering stage	0.379
SRP132670	SRR6706286	Control	2.061
	SRR6706287	Light intensity 50%	2.563
	SRR6706288	Light intensity 20%	2.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.488
	CNS0095593	Slightly white alabastrum(diploid) 2	5.415
	CNS0095594	Slightly white alabastrum(diploid) 3	7.212
	CNS0095595	Whole white alabastrum(diploid) 2	4.873
	CNS0095596	Whole white alabastrum(diploid) 3	4.464
	CNS0095597	Whole white alabastrum(diploid) 4	3.998
	CNS0095598	Silvery flower (diploied) 1	2.650
	CNS0095599	Silvery flower (diploied) 2	3.081
	CNS0095600	Silvery flower (diploied) 3	2.058
	CNS0095601	Golden flower (diploid) 1	2.868
	CNS0095602	Golden flower (diploid) 2	1.718
	CNS0095603	Golden flower (diploid) 3	2.125
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.626
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.426
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.837
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.532
	CNS0095610	Silvery flower (tetraploid) 1	0.610
	CNS0095611	Silvery flower (tetraploid) 2	1.076
	CNS0095612	Silvery flower (tetraploid) 3	0.395
	CNS0095613	Golden flower (tetraploid) 1	0.245
	CNS0095614	Golden flower (tetraploid) 2	0.467
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	7.270
	CRR073298	Stem 2	6.503
	CRR073299	Stem 3	8.623
	CRR073300	Leaf 1	3.667
	CRR073301	Leaf 2	2.651
	CRR073302	Leaf 3	2.701
	CRR073303	Juvenile bud 1	1.950
	CRR073304	Juvenile bud 2	2.054
	CRR073305	Juvenile bud 3	2.362
	CRR073306	Third green 1	0.238
	CRR073307	Third green 2	0.185
	CRR073308	Third green 3	0.294
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.131
	CRR073311	Second white 3	0.156
	CRR073312	Silver flowering 1	0.047
	CRR073313	Silver flowering 2	0.022
	CRR073314	Silver flowering 3	0.293
	CRR073315	Gold flowering 1	0.590
	CRR073316	Gold flowering 2	0.564
	CRR073317	Gold flowering 3	0.508
	CRR073318	Tawny withering 1	3.355
	CRR073319	Tawny withering 2	2.014
	CRR073320	Tawny withering 3	3.841