Gene detail

Detail information of GWHGAAZE030408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009390321.1	1.8776E-128	PREDICTED: uncharacterized protein LOC103976734 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|B4FHH9\|B4FHH9_MAIZE	3E-96	Uncharacterized protein {ECO:0000313\|EMBL:ACF81572.1}
TAIR10	AT1G03280.1	3E-50	Transcription factor TFIIE, alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43227059	43235316	+
GWHAAZE00000009	mRNA	43227059	43235316	+
GWHAAZE00000009	exon	43227059	43227192	+
GWHAAZE00000009	exon	43227689	43227809	+
GWHAAZE00000009	exon	43231878	43231997	+
GWHAAZE00000009	exon	43233551	43233745	+
GWHAAZE00000009	exon	43233856	43234071	+
GWHAAZE00000009	exon	43234185	43234319	+
GWHAAZE00000009	exon	43235281	43235316	+
GWHAAZE00000009	CDS	43227059	43227192	+
GWHAAZE00000009	CDS	43227689	43227809	+
GWHAAZE00000009	CDS	43231878	43231997	+
GWHAAZE00000009	CDS	43233551	43233745	+
GWHAAZE00000009	CDS	43233856	43234071	+
GWHAAZE00000009	CDS	43234185	43234319	+
GWHAAZE00000009	CDS	43235281	43235316	+

Transcript Sequence
>GWHTAAZE030442 ATGGATGATGATAGGTTGGTGAAGCTTGCTGCAAGGGCTTTTTATGATGATATAACGAAAGGAGATAACCAGCCCAAAATTGGTAGGAGTGATAACAGGGGGATCGCTGTCGTGGTTCTTGATGCCCTCACAAGGCGTCAATGGGTAAGAGAAGAAGACTTGGCAAAGGACTTAAAGCTGCACTCAAAGCAACTTCGTCGAACTCTACGTTTTTTTGAAGAAGAAAAGCTAGTCACGCGGGATCACAGGAAAGAGACAGCAAAAGGTGCAAAGATTTATAGTGCTGCAGTGGCTGCCACTCAGCAGACTGGAAGAGAGGGAGAGGAAAAGATTAAGCTGCATACTCACTCTTACTGTTGTCTAGACTATGCACAGGTACAGCTAAAGCCCCTAATGGAGCAACTCAGCAGAGTAAAAGATTTGGCTGTTCCTGAATTTGGAACTCTTCAAGCATGGGAAGTTCGAGCAAATGCTGCTGCACGTGCAAATGGTGATTCTAATTCCAATGATCCCAATAAATCTTCACAGGGTTATGGTGGAACTCGTATGCCATTTGTTGGAGAGACAAAGGTTGAAGTTGCGTTCTCCGGTACTGAAGAAAAAGGAGATATCAAATCCGAGAGTGCAAATGAACCTATGAAAGTTTTGCCTCCATGGATGATCAAGCAAGGAATGAACCTTACAAAAGAACAACGCGGGGAGGTCAAACAAGAGTCAAAGATGGAGGGTACATCAGCATCTGCAGGATTATCTGATGATAAGAAGTCAGTAGATGAAAAAGATGACGATGAATATTTTAAAGCCTATTATGCCGCTCTACTTCAGAGGCAGCAAGAGCAAGAGGCTGCTTCCACGAAGGAACAGGAGTTGCCAAATACTAGCATTTCGGATACTGTAAATGGCACATCTTCGGACCGTCAAGCTCCTTCACTTCCACCTGCTGCTACACCACCGTAG

Network for GWHGAAZE030408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02002.18	TFIIE_alpha	36	92	7.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03136	TFIIE1, GTF2E1, TFA1, tfe	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.279
	SRR3591706	second leaf	11.581
	SRR3591707	mature leaf	6.758
	SRR3591708	Shoot apex	20.447
	SRR3591709	Stem	15.965
	SRR3591710	White floral bud	8.522
	SRR3591711	White flower	7.608
	SRR3591712	Green floral bud	7.962
	SRR3591713	Yellow flower	5.676
SRP173429	SRR8316895	Juvenile bud stage	4.749
	SRR8316896	Juvenile bud stage	8.458
	SRR8316897	Juvenile bud stage	2.773
	SRR8316894	Third green stage	3.820
	SRR8316900	Third green stage	8.374
	SRR8316901	Third green stage	8.994
	SRR8316898	Complete white stage	2.472
	SRR8316899	Complete white stage	7.406
	SRR8316903	Complete white stage	4.090
	SRR8316902	Silver flowering stage	2.497
	SRR8316904	Silver flowering stage	3.996
	SRR8316905	Silver flowering stage	2.419
	SRR8316906	Gold flowering stage	6.642
	SRR8316907	Gold flowering stage	5.767
	SRR8316908	Gold flowering stage	4.353
SRP132670	SRR6706286	Control	4.832
	SRR6706287	Light intensity 50%	6.553
	SRR6706288	Light intensity 20%	5.569
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.117
	CNS0095593	Slightly white alabastrum(diploid) 2	6.598
	CNS0095594	Slightly white alabastrum(diploid) 3	5.948
	CNS0095595	Whole white alabastrum(diploid) 2	4.688
	CNS0095596	Whole white alabastrum(diploid) 3	5.770
	CNS0095597	Whole white alabastrum(diploid) 4	8.136
	CNS0095598	Silvery flower (diploied) 1	7.993
	CNS0095599	Silvery flower (diploied) 2	6.390
	CNS0095600	Silvery flower (diploied) 3	5.893
	CNS0095601	Golden flower (diploid) 1	7.408
	CNS0095602	Golden flower (diploid) 2	6.453
	CNS0095603	Golden flower (diploid) 3	4.794
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.267
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.499
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.468
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.212
	CNS0095610	Silvery flower (tetraploid) 1	9.894
	CNS0095611	Silvery flower (tetraploid) 2	8.428
	CNS0095612	Silvery flower (tetraploid) 3	6.902
	CNS0095613	Golden flower (tetraploid) 1	5.557
	CNS0095614	Golden flower (tetraploid) 2	8.703
	CNS0095615	Golden flower (tetraploid) 3	6.326
CRA001975	CRR073297	Stem 1	9.878
	CRR073298	Stem 2	9.153
	CRR073299	Stem 3	5.441
	CRR073300	Leaf 1	10.581
	CRR073301	Leaf 2	4.985
	CRR073302	Leaf 3	3.411
	CRR073303	Juvenile bud 1	4.152
	CRR073304	Juvenile bud 2	3.997
	CRR073305	Juvenile bud 3	4.063
	CRR073306	Third green 1	1.297
	CRR073307	Third green 2	1.436
	CRR073308	Third green 3	2.053
	CRR073309	Second white 1	1.761
	CRR073310	Second white 2	1.445
	CRR073311	Second white 3	1.578
	CRR073312	Silver flowering 1	1.393
	CRR073313	Silver flowering 2	1.585
	CRR073314	Silver flowering 3	3.260
	CRR073315	Gold flowering 1	1.883
	CRR073316	Gold flowering 2	2.840
	CRR073317	Gold flowering 3	0.814
	CRR073318	Tawny withering 1	4.410
	CRR073319	Tawny withering 2	6.468
	CRR073320	Tawny withering 3	3.719