Gene detail

Detail information of GWHGAAZE030411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663536.1	0	PREDICTED: translation initiation factor eIF-2B subunit delta isoform X3 [Vitis vinifera]
COG	NP_577851.1	9E-31	translation initiation factor IF-2
trEMBL	tr\|B9RE48\|B9RE48_RICCO	0	Translation initiation factor 2b, delta subunit, putative {ECO:0000313\|EMBL:EEF50656.1}
TAIR10	AT5G38640.1	0	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43259673	43263412	+
GWHAAZE00000009	mRNA	43259673	43263412	+
GWHAAZE00000009	exon	43259673	43260167	+
GWHAAZE00000009	exon	43261309	43261480	+
GWHAAZE00000009	exon	43261783	43262156	+
GWHAAZE00000009	exon	43262241	43262985	+
GWHAAZE00000009	exon	43263086	43263182	+
GWHAAZE00000009	exon	43263262	43263412	+
GWHAAZE00000009	CDS	43259673	43260167	+
GWHAAZE00000009	CDS	43261309	43261480	+
GWHAAZE00000009	CDS	43261783	43262156	+
GWHAAZE00000009	CDS	43262241	43262985	+
GWHAAZE00000009	CDS	43263086	43263182	+
GWHAAZE00000009	CDS	43263262	43263412	+

Transcript Sequence
>GWHTAAZE030445 CCAGAGATCTCTCCCCGTACCTCTGATTACACCATGGATAACAATCGTCGACCCTCACGAGTAATAGACCCGAAAGTCCGAAAGGTCGGATTCTTTGCACCCACCCCACCCCTAGACGGTACCCAATCCAACACGCTCGCCTCTTCCCCTCCGGTTTCCCTCTCTCCGTCCGGTAATTCCCTCTCTCCCGTCATGATAATACCTCCTCGCCACTTCGCCGACAACCTCTCACGTGCCGTAGGCGTGCCTGTCCCTTCCATACGTTTGAGACAGACTTCGATGGATAAACTTACCATTGGTAGCTATAATCCTCCCGACTCCGTCCTTGGCTGCTCGCCGATGATGTCGCCGTCTAGTATGGTTAGGGATGGAAAGTTTTCTGATGAGTCTTCGGTGAATTTGATTCGGAGGAGTAGTTCGGGGAAATTCACTGCTTCGTCTCTTCCGAGTTGTGGATTTGATTTGATGCCGCAAGCGAATAAGGATCGCGGAGTGTATATTGAAAAAAGAGACTGTATTTATCTTGTAGAAGCCGATGGAGAACCAGTTGTAGAAGTGCTGCCGAAATCAAACCCTAAGCCATTGAAAGAGAAAACCACAAAAGCTGAAAGGCGTGCCCTGCAGGAGGCTCAAAGAGCGGCAAAAGCTGCGGAAAAATGTTCAAACATTGGAGGGAGTAGTAAACCTGTTGCTGCTTCCGGGGAAGCGGCTTCGGTACACGAACTAACAGGTAAAGCAGTAGCAGCAAAGCGTCATATACAAAAGAAAGACGGTCTTGCAGTTACATCAGCAACAGCTTCTGAGAAGAAAGGACCACCACCAGAGAAAGATAGGAAGAAAGATGTGCCTCCTCCTCGTATGCAATTTGATGATAAGAACAGGGTCGAAAAAGCTAAAAAGCGTTCAGTAGTCAAACAAGCTGAAGCCAGAAACAGAGTAGAATTGTTTCGCCATTTGCCCCAATATGAACATGGAACTCAGCTTCCTGATCTTGAGTCCAAGTTTTTCCAACTTGATCCAGTTCATCCTGCTGTTTACAAGGTTGGATTACAATATTTAACTGGAGATATTTGTGGGGGCAATGCTCGTTGTATTGCAATGCTTCTGGCATTTCGGGAAGCCATCAAAGGCTACTCTACACCATCAGAAAAAACTCTTCCTAGAGACTTAACTGCGAAGATCAATAGCTATGTTTCATTCTTGATAGAATGCAGACCCCTTTCAATCAGCATGGGAAATGCAATTCGATTTTTAAAGGCTCGAATAGCCAATTTACCATTAACTCTTTCCGATTCTGATGCTAAAGCCTCTGTATGTTTAGACATTGACCGTTTCATTAATGAGAAAATAATACTTGCAGACAAAGTAATAGTGGGAAACGCAGTGACAAAGGTAAGGGATGGGGATGTTCTTTTAACATATGGTTCTTCCTCTGTTGTTGAAATGATTCTTTTACATGCTCATGAACTTGGGAAACAATTCCGTGTCGTGGTGGTTGACTCTCGTCCTAAGCTTGAAGGTCAAACACTAGTACGAAGGCTAGTGGGAAAGGGCCTGAGTTGTACATATACTCATATAAACGCTGTTTCATATATCATGCATGAAGCCACGAGAGTATTTTTGGGGGTTGAATCTGTATTATCTAATGGAACTGCATACTCGAGGGTTGGGACTGCATGTGTTGCTATGGTTGCTCATGCGTGCCATGTCCCAGTTTTGATCTGTTGTGAAGCATACAAGTTTCATGAACGGGTACTGCTGGATTCAATTTGTTCTAATGAACTTGGTGATCCAAATGCCATATCTAAAGTTCCAGGGAGGAAGGATGTTAACTATTTGGATGATTGGGCTGATAAGGAAAATCTGCAGCTTCTGAATTTAGTTTATGATGTTACTCCATCAGAATACATCTCTATGATAATTTCAGATTATGGAATGGTAAGATATTATTTGTGGGATTTCTTTCTACTATCACGTCTCACGTCTAGAGGAAGGCAATGGCTACTTAAGAAAATCAGTGCTTTTGTAATGTAA

Network for GWHGAAZE030411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01008.18	IF-2B	358	647	7.10E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03680	EIF2B4	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0044237	biological_process	cellular metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.000
	SRR3591706	second leaf	5.801
	SRR3591707	mature leaf	8.258
	SRR3591708	Shoot apex	5.645
	SRR3591709	Stem	9.907
	SRR3591710	White floral bud	8.581
	SRR3591711	White flower	14.636
	SRR3591712	Green floral bud	12.958
	SRR3591713	Yellow flower	19.147
SRP173429	SRR8316895	Juvenile bud stage	10.258
	SRR8316896	Juvenile bud stage	14.070
	SRR8316897	Juvenile bud stage	6.028
	SRR8316894	Third green stage	5.181
	SRR8316900	Third green stage	16.982
	SRR8316901	Third green stage	14.428
	SRR8316898	Complete white stage	4.909
	SRR8316899	Complete white stage	21.180
	SRR8316903	Complete white stage	9.580
	SRR8316902	Silver flowering stage	7.285
	SRR8316904	Silver flowering stage	7.968
	SRR8316905	Silver flowering stage	3.903
	SRR8316906	Gold flowering stage	17.568
	SRR8316907	Gold flowering stage	13.136
	SRR8316908	Gold flowering stage	18.971
SRP132670	SRR6706286	Control	13.838
	SRR6706287	Light intensity 50%	13.542
	SRR6706288	Light intensity 20%	14.105
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.958
	CNS0095593	Slightly white alabastrum(diploid) 2	5.306
	CNS0095594	Slightly white alabastrum(diploid) 3	7.352
	CNS0095595	Whole white alabastrum(diploid) 2	6.394
	CNS0095596	Whole white alabastrum(diploid) 3	6.984
	CNS0095597	Whole white alabastrum(diploid) 4	5.560
	CNS0095598	Silvery flower (diploied) 1	10.795
	CNS0095599	Silvery flower (diploied) 2	8.267
	CNS0095600	Silvery flower (diploied) 3	14.905
	CNS0095601	Golden flower (diploid) 1	6.115
	CNS0095602	Golden flower (diploid) 2	14.508
	CNS0095603	Golden flower (diploid) 3	14.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.319
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.968
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.461
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.153
	CNS0095610	Silvery flower (tetraploid) 1	16.996
	CNS0095611	Silvery flower (tetraploid) 2	16.513
	CNS0095612	Silvery flower (tetraploid) 3	11.281
	CNS0095613	Golden flower (tetraploid) 1	9.743
	CNS0095614	Golden flower (tetraploid) 2	15.853
	CNS0095615	Golden flower (tetraploid) 3	14.216
CRA001975	CRR073297	Stem 1	10.790
	CRR073298	Stem 2	8.368
	CRR073299	Stem 3	9.634
	CRR073300	Leaf 1	12.055
	CRR073301	Leaf 2	9.930
	CRR073302	Leaf 3	6.738
	CRR073303	Juvenile bud 1	9.171
	CRR073304	Juvenile bud 2	5.675
	CRR073305	Juvenile bud 3	11.732
	CRR073306	Third green 1	2.141
	CRR073307	Third green 2	2.105
	CRR073308	Third green 3	2.937
	CRR073309	Second white 1	5.551
	CRR073310	Second white 2	6.556
	CRR073311	Second white 3	9.581
	CRR073312	Silver flowering 1	10.808
	CRR073313	Silver flowering 2	13.019
	CRR073314	Silver flowering 3	11.246
	CRR073315	Gold flowering 1	5.780
	CRR073316	Gold flowering 2	8.173
	CRR073317	Gold flowering 3	6.181
	CRR073318	Tawny withering 1	8.504
	CRR073319	Tawny withering 2	6.271
	CRR073320	Tawny withering 3	6.781