Detail information of GWHGAAZE030419


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272187.11.61906E-83PREDICTED: protein Dr1 homolog [Vitis vinifera]
Swissprottr|P49592|NC2B_ARATH6E-74Protein Dr1 homolog
trEMBLtr|D7SIT4|D7SIT4_VITVI6E-84Putative uncharacterized protein {ECO:0000313|EMBL:CBI15395.3}
TAIR10AT5G23090.45E-60nuclear factor Y, subunit B13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4332454243327053-
GWHAAZE00000009mRNA4332454243327053-
GWHAAZE00000009exon4332454243324703-
GWHAAZE00000009exon4332550243325570-
GWHAAZE00000009exon4332626343326357-
GWHAAZE00000009exon4332696943327053-
GWHAAZE00000009CDS4332696943327053-
GWHAAZE00000009CDS4332626343326357-
GWHAAZE00000009CDS4332550243325570-
GWHAAZE00000009CDS4332454243324703-
Transcript Sequence

Network for GWHGAAZE030419

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0021


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF2591.20E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.700
SRR3591706second leaf27.614
SRR3591707mature leaf26.793
SRR3591708Shoot apex52.335
SRR3591709Stem55.808
SRR3591710White floral bud46.897
SRR3591711White flower54.477
SRR3591712Green floral bud45.496
SRR3591713Yellow flower65.242
SRP173429 SRR8316895Juvenile bud stage 19.386
SRR8316896Juvenile bud stage 22.667
SRR8316897Juvenile bud stage 14.237
SRR8316894Third green stage 13.260
SRR8316900Third green stage 32.451
SRR8316901Third green stage 26.819
SRR8316898Complete white stage 11.636
SRR8316899Complete white stage 32.099
SRR8316903Complete white stage 27.802
SRR8316902Silver flowering stage15.437
SRR8316904Silver flowering stage18.440
SRR8316905Silver flowering stage8.737
SRR8316906Gold flowering stage 30.803
SRR8316907Gold flowering stage 24.708
SRR8316908Gold flowering stage 33.412
SRP132670SRR6706286Control13.423
SRR6706287Light intensity 50%14.521
SRR6706288Light intensity 20%14.608
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.240
CNS0095593Slightly white alabastrum(diploid) 242.890
CNS0095594Slightly white alabastrum(diploid) 344.860
CNS0095595Whole white alabastrum(diploid) 239.064
CNS0095596Whole white alabastrum(diploid) 333.356
CNS0095597Whole white alabastrum(diploid) 441.920
CNS0095598Silvery flower (diploied) 147.796
CNS0095599Silvery flower (diploied) 237.590
CNS0095600Silvery flower (diploied) 337.725
CNS0095601Golden flower (diploid) 145.244
CNS0095602Golden flower (diploid) 243.597
CNS0095603Golden flower (diploid) 341.254
CNS0095604Slightly white alabastrum(tetraploid) 150.634
CNS0095605Slightly white alabastrum(tetraploid) 256.760
CNS0095606Slightly white alabastrum(tetraploid) 367.518
CNS0095607Whole white alabastrum(tetraploid) 141.332
CNS0095608Whole white alabastrum(tetraploid) 245.407
CNS0095609Whole white alabastrum(tetraploid) 340.575
CNS0095610Silvery flower (tetraploid) 148.473
CNS0095611Silvery flower (tetraploid) 244.922
CNS0095612Silvery flower (tetraploid) 346.379
CNS0095613Golden flower (tetraploid) 167.445
CNS0095614Golden flower (tetraploid) 255.799
CNS0095615Golden flower (tetraploid) 354.853
CRA001975CRR073297Stem 116.810
CRR073298Stem 218.239
CRR073299Stem 325.597
CRR073300Leaf 120.653
CRR073301Leaf 221.206
CRR073302Leaf 315.448
CRR073303Juvenile bud 119.421
CRR073304Juvenile bud 211.642
CRR073305Juvenile bud 320.896
CRR073306Third green 115.067
CRR073307Third green 213.328
CRR073308Third green 311.155
CRR073309Second white 119.356
CRR073310Second white 215.552
CRR073311Second white 313.921
CRR073312Silver flowering 112.886
CRR073313Silver flowering 29.780
CRR073314Silver flowering 37.367
CRR073315Gold flowering 111.690
CRR073316Gold flowering 212.744
CRR073317Gold flowering 36.920
CRR073318Tawny withering 118.517
CRR073319Tawny withering 216.826
CRR073320Tawny withering 324.606