Gene detail

Detail information of GWHGAAZE030453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO68782.1	1.79908E-72	floral-binding protein 9, partial [Nyssa sylvatica]
Swissprot	tr\|Q39685\|CMB1_DIACA	5E-45	MADS-box protein CMB1
trEMBL	tr\|I7D653\|I7D653_9ASTE	7E-73	Floral-binding protein 9 {ECO:0000313\|EMBL:AFO68782.1} (Fragment)
TAIR10	AT3G02310.1	6E-35	K-box region and MADS-box transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43827445	43829838	-
GWHAAZE00000009	mRNA	43827445	43829838	-
GWHAAZE00000009	exon	43829761	43829838	-
GWHAAZE00000009	exon	43829333	43829394	-
GWHAAZE00000009	exon	43829037	43829136	-
GWHAAZE00000009	exon	43828563	43828604	-
GWHAAZE00000009	exon	43828126	43828262	-
GWHAAZE00000009	exon	43827445	43827858	-
GWHAAZE00000009	CDS	43829761	43829838	-
GWHAAZE00000009	CDS	43829333	43829394	-
GWHAAZE00000009	CDS	43829037	43829136	-
GWHAAZE00000009	CDS	43828563	43828604	-
GWHAAZE00000009	CDS	43828126	43828262	-
GWHAAZE00000009	CDS	43827765	43827858	-
GWHAAZE00000009	three_prime_UTR	43827445	43827764	-

Transcript Sequence
>GWHTAAZE030487 ATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGTTCACTGGATGTCAGCCAACCAGTCAATGAGACCCAGAACAATTACGTTGATTATATGACGCTTAAAGCAAGAGTCGAGGTTTTGCAACGATCTCAGAGAAACCTCCTTGGGGAAGACTTGGGGCCCTTGAGCACTAAGGAGCTTGAGCAGCTTGAGCACCAACTAGAGATGTCCTTGAAGCAAATCAGATCAACCAAGGAACAAATGCTGGCTGAAACTAACAAAACCCTAAGAAGCAAGTTGGAAGAAAGTGCCCCGGAATTTCCCCTTGGACTATCATGGGAAGGTGGGGGAGGGCATAACATTCCCCATAACCGCCTTCCTCCTCAATCACAAGCCTTCTTCCACCCTCTTGGCTTGAACTCATTCCAAATGGGGTACAACCCTCGTGGTGTGGGTTCAGAGGAGATGAATGTTGGACCCCCTACCACCCACAATCCTAATGGGTTCTTTCCAGAGTGGATGCTTTGAAGGAAGATTATATTGATCAACACCTTCCTCATTAATTTCATAATGTACTGTATTTTTAGCATTTGTGTTTCTGCAATTTTCTCTTGTTTTGATTTTTTTTTCTTTTGGCGTGGTAGCGATTTTCATAAAAAACCTCTTGTAATATATTATTGTTTGAGAGGTAAGTATAAGTCGTCATAAGGACGGCAATGACTTCCTTTGATTTGATAACGAACATGCATGGGATTGGAATCCTATAGCCATGGATGTGGTTATTCAAAACCCTAAGTTGAATTTGTACCATTGTCTCCGTTTGTGATAATTTTGTTAGTTTATATATA

Network for GWHGAAZE030453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0115

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01486.18	K-box	23	96	5.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.163
	SRR3591710	White floral bud	46.513
	SRR3591711	White flower	30.193
	SRR3591712	Green floral bud	59.287
	SRR3591713	Yellow flower	5.537
SRP173429	SRR8316895	Juvenile bud stage	18.452
	SRR8316896	Juvenile bud stage	22.580
	SRR8316897	Juvenile bud stage	10.178
	SRR8316894	Third green stage	12.796
	SRR8316900	Third green stage	27.280
	SRR8316901	Third green stage	29.347
	SRR8316898	Complete white stage	15.778
	SRR8316899	Complete white stage	122.007
	SRR8316903	Complete white stage	31.755
	SRR8316902	Silver flowering stage	3.059
	SRR8316904	Silver flowering stage	4.316
	SRR8316905	Silver flowering stage	1.284
	SRR8316906	Gold flowering stage	1.496
	SRR8316907	Gold flowering stage	3.330
	SRR8316908	Gold flowering stage	1.957
SRP132670	SRR6706286	Control	44.821
	SRR6706287	Light intensity 50%	41.000
	SRR6706288	Light intensity 20%	47.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.910
	CNS0095593	Slightly white alabastrum(diploid) 2	68.035
	CNS0095594	Slightly white alabastrum(diploid) 3	24.738
	CNS0095595	Whole white alabastrum(diploid) 2	48.372
	CNS0095596	Whole white alabastrum(diploid) 3	9.704
	CNS0095597	Whole white alabastrum(diploid) 4	32.456
	CNS0095598	Silvery flower (diploied) 1	63.508
	CNS0095599	Silvery flower (diploied) 2	53.189
	CNS0095600	Silvery flower (diploied) 3	19.977
	CNS0095601	Golden flower (diploid) 1	39.864
	CNS0095602	Golden flower (diploid) 2	21.084
	CNS0095603	Golden flower (diploid) 3	20.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	130.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.191
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.382
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.943
	CNS0095610	Silvery flower (tetraploid) 1	9.616
	CNS0095611	Silvery flower (tetraploid) 2	18.987
	CNS0095612	Silvery flower (tetraploid) 3	7.727
	CNS0095613	Golden flower (tetraploid) 1	2.465
	CNS0095614	Golden flower (tetraploid) 2	4.162
	CNS0095615	Golden flower (tetraploid) 3	0.232
CRA001975	CRR073297	Stem 1	29.403
	CRR073298	Stem 2	33.487
	CRR073299	Stem 3	28.742
	CRR073300	Leaf 1	50.871
	CRR073301	Leaf 2	63.509
	CRR073302	Leaf 3	52.458
	CRR073303	Juvenile bud 1	61.216
	CRR073304	Juvenile bud 2	31.995
	CRR073305	Juvenile bud 3	123.498
	CRR073306	Third green 1	3.333
	CRR073307	Third green 2	6.702
	CRR073308	Third green 3	9.698
	CRR073309	Second white 1	0.286
	CRR073310	Second white 2	0.067
	CRR073311	Second white 3	0.116
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.080
	CRR073314	Silver flowering 3	0.077
	CRR073315	Gold flowering 1	1.337
	CRR073316	Gold flowering 2	1.830
	CRR073317	Gold flowering 3	1.531
	CRR073318	Tawny withering 1	0.716
	CRR073319	Tawny withering 2	0.963
	CRR073320	Tawny withering 3	0.392