Gene detail

Detail information of GWHGAAZE030454

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265203.1	1.0312E-138	PREDICTED: squamosa promoter-binding-like protein 6 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q94JW8\|SPL6_ARATH	2E-43	Squamosa promoter-binding-like protein 6
trEMBL	tr\|F6GTE3\|F6GTE3_VITVI	4E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43152.1}
TAIR10	AT1G69170.1	1E-38	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43872948	43875465	+
GWHAAZE00000009	mRNA	43872948	43875465	+
GWHAAZE00000009	exon	43872948	43873117	+
GWHAAZE00000009	exon	43873824	43873960	+
GWHAAZE00000009	exon	43874633	43875465	+
GWHAAZE00000009	CDS	43872948	43873117	+
GWHAAZE00000009	CDS	43873824	43873960	+
GWHAAZE00000009	CDS	43874633	43875465	+

Transcript Sequence
>GWHTAAZE030488 GTGGGGAGTTTGAGTTCTTCAATACCATTTTGCCAAGTTCAAGGATGTAAGAAAGATCTTAGCTCCTCCAAAGATTACCACAAGAGGCATAAAGTCTGTGAGATTCACTCAAAGACTGCGAAAGTCATCGTTAATGGCATTGAACAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATTTGCTGCCTGAATTTGATGATGGTAAGCGGAGCTGCCGTAAACGCCTTGCAGGCCACAATGAGCGCCGGAGGAAACCTCACGTGGATGTTCACTATGGCAGAACTGGGAGGTCGTTTCAATCATATAAAGGTTCTGCAGGTACCAGGTTTCAGGGTAACGCAGTTACAACTTCATCTTTCATTTGCCAAGATATACTACCTAGCAGACTTGTTCATCTACAGAAATACAACATTAACAACTGGTGCAACCATATAAAAGTCGAAGATATGACCGAGTATAATTCTCAATCAGCCATAAACACCATTGCCAATGAACAAATTCATCCGAGATCCCTTTTTCCTTCTTATGGGTTCGAAAAACATTGCCCCCCTGCTGAAACAGGAAATAAATTTAATGAGAACAATAACCAATACAAACACGACCCACCTAGCTCAAGCCTTGGCCCTCATTCTGCATTACAGAATACCTCTTTAGGAGGCGAAGGTTTTACTTTTTTTGACTCGGCTTCAACTGTTCAAGCACTATCAGGGGTATCAGACTCTGGTCGAGCTCTCTCTCTTCTGTCATCTCCATCACAGAATTCTTCATGCCAGTCATCAATTCCCATGGGTCTCCCCTTGATTATCCCAGGCAATCGAGTATCTGATCAAAAGCTCTTTGAAGTGGATCAGCAGGGTCCGACAACTTTGTTCTCGCATAAATTTCATTCAAATTCTCTGCAGGGGAGTAACTTGAATCCCATGCCTGTCTCTGATGGTAGCGATGCTGTCAACTTTGGGTTTGACCTGATGATCCAAGGATCAGAATTCACTAATACCAAGGAGGACCGGATTTCATGTGAAGGTGGATCCACTATTGATTTGCTCCAACTGTCATCGCAGCTTCAAGAAGTGGAGCATCAAAGGCAAACCCTCCTGGTGAAGCAGGAAAATTATTCCTTTTGCGGCCTCAGGATGACATAA

Network for GWHGAAZE030454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	11	84	4.70E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.168
	SRR3591706	second leaf	5.292
	SRR3591707	mature leaf	2.457
	SRR3591708	Shoot apex	17.857
	SRR3591709	Stem	7.568
	SRR3591710	White floral bud	5.743
	SRR3591711	White flower	13.061
	SRR3591712	Green floral bud	6.006
	SRR3591713	Yellow flower	0.705
SRP173429	SRR8316895	Juvenile bud stage	9.972
	SRR8316896	Juvenile bud stage	7.262
	SRR8316897	Juvenile bud stage	5.188
	SRR8316894	Third green stage	4.292
	SRR8316900	Third green stage	6.789
	SRR8316901	Third green stage	5.625
	SRR8316898	Complete white stage	0.075
	SRR8316899	Complete white stage	7.863
	SRR8316903	Complete white stage	1.605
	SRR8316902	Silver flowering stage	0.058
	SRR8316904	Silver flowering stage	0.069
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.932
	SRR6706287	Light intensity 50%	5.016
	SRR6706288	Light intensity 20%	4.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.390
	CNS0095593	Slightly white alabastrum(diploid) 2	8.640
	CNS0095594	Slightly white alabastrum(diploid) 3	7.098
	CNS0095595	Whole white alabastrum(diploid) 2	5.555
	CNS0095596	Whole white alabastrum(diploid) 3	3.035
	CNS0095597	Whole white alabastrum(diploid) 4	5.620
	CNS0095598	Silvery flower (diploied) 1	16.285
	CNS0095599	Silvery flower (diploied) 2	18.284
	CNS0095600	Silvery flower (diploied) 3	4.182
	CNS0095601	Golden flower (diploid) 1	19.051
	CNS0095602	Golden flower (diploid) 2	11.621
	CNS0095603	Golden flower (diploid) 3	9.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.176
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.230
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.595
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.968
	CNS0095610	Silvery flower (tetraploid) 1	0.379
	CNS0095611	Silvery flower (tetraploid) 2	2.983
	CNS0095612	Silvery flower (tetraploid) 3	1.257
	CNS0095613	Golden flower (tetraploid) 1	0.155
	CNS0095614	Golden flower (tetraploid) 2	0.274
	CNS0095615	Golden flower (tetraploid) 3	0.054
CRA001975	CRR073297	Stem 1	27.703
	CRR073298	Stem 2	28.293
	CRR073299	Stem 3	22.015
	CRR073300	Leaf 1	12.471
	CRR073301	Leaf 2	15.121
	CRR073302	Leaf 3	14.889
	CRR073303	Juvenile bud 1	3.961
	CRR073304	Juvenile bud 2	0.876
	CRR073305	Juvenile bud 3	4.405
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.049
	CRR073308	Third green 3	0.129
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.072
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.408
	CRR073316	Gold flowering 2	1.362
	CRR073317	Gold flowering 3	3.356
	CRR073318	Tawny withering 1	3.916
	CRR073319	Tawny withering 2	6.433
	CRR073320	Tawny withering 3	5.096