Gene detail

Detail information of GWHGAAZE030457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010253318.1	3.9259E-121	PREDICTED: psbP-like protein 1, chloroplastic [Nelumbo nucifera]
Swissprot	tr\|P82538\|PPL1_ARATH	1E-94	PsbP-like protein 1, chloroplastic (Precursor)
trEMBL	tr\|A0A068V3N8\|A0A068V3N8_COFCA	5E-120	Coffea canephora DH200=94 genomic scaffold, scaffold_97 {ECO:0000313\|EMBL:CDP15251.1}
TAIR10	AT3G55330.1	6E-76	PsbP-like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	43904546	43907079	+
GWHAAZE00000009	mRNA	43904546	43907079	+
GWHAAZE00000009	exon	43904546	43904648	+
GWHAAZE00000009	exon	43904761	43904844	+
GWHAAZE00000009	exon	43905191	43905273	+
GWHAAZE00000009	exon	43905466	43905588	+
GWHAAZE00000009	exon	43905810	43905881	+
GWHAAZE00000009	exon	43906276	43906372	+
GWHAAZE00000009	exon	43906735	43907079	+
GWHAAZE00000009	CDS	43904546	43904648	+
GWHAAZE00000009	CDS	43904761	43904844	+
GWHAAZE00000009	CDS	43905191	43905273	+
GWHAAZE00000009	CDS	43905466	43905588	+
GWHAAZE00000009	CDS	43905810	43905881	+
GWHAAZE00000009	CDS	43906276	43906372	+
GWHAAZE00000009	CDS	43906735	43906838	+
GWHAAZE00000009	three_prime_UTR	43906839	43907079	+

Transcript Sequence
>GWHTAAZE030491 ATGCATCAGCAAGCGTTGAATAGGCAAGGCTACTTTAGAAAAGGTGTTTCCTTTGTCATCAGGGCGAAACAAGTATCAGCTGCTTCAACAACTCCTCATCAAGATAAACCTGGAAGGCGTGAAATACTTACCCTTGGAGCAACAGTATCCTCTTGGTTTTCACTCTTTTACCAGACGTCAACATCATTTGCTGCAGAAACTAAAAAGGGATATCTAGGAGTTACCGACAAGAAGGATGGATACTCCTTGGTCTATCCCTTCGGGTGGCAGGAAGTTACAGTTGAAGGCCAAGACAAAGTATTCAAAGACGTAATTGAACCACTAGAAAATGTCAGTGTTACTATGTTCCCTACCAACAAACAGGACATCCGAGACCTTGGCTCCCCACAAGAGGTTGCTGAAGCTTTAATTAAAAAGGTTTTGGCTCCCCCTTCCCAGAAGACAAAGCTAATTGAGGCAGCAGAGCATGATGTTGATGGGAAAACTTATTACACATTCGAGTTCGTTGCTAAAGCCCCAAACTTTACTCGCCATGCTCTCAGTGCGATTTGTATTGGCAATGGCAAGTTTTACACGGTGACGACAGGGGCCAACGAGAGGAGGTGGGAGAAAATGAAAGACAAATTACACACTGTGATTGATTCCTTCAAAATCTTCAATGTTTAAGGTGGTATGTTACCCATATCGTTATTCTTTTTCTTCCCCGGTCACCTCGAATTGTTTCAAGTACTTGTCCATCATAGAGGCTATTCAATCTATTTAGTTATGAGCATTTTTTGTCTCGAAAAATTGAATTTCCAAGTACTGCTGTGTGTGGTTTTTTTCCCAAAAGTTTGAGTGTAGTTGTAATTGTAAGATGAATAATCCATTTGTGTCAATCAAAATATAATTATTATTGTTAGTTATA

Network for GWHGAAZE030457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01789.17	PsbP	71	218	2.50E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02717	psbP	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009523	cellular_component	photosystem II
GO:0009654	cellular_component	photosystem II oxygen evolving complex
GO:0019898	cellular_component	extrinsic component of membrane
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.015
	SRR3591706	second leaf	159.665
	SRR3591707	mature leaf	69.798
	SRR3591708	Shoot apex	71.104
	SRR3591709	Stem	9.467
	SRR3591710	White floral bud	4.438
	SRR3591711	White flower	5.131
	SRR3591712	Green floral bud	12.190
	SRR3591713	Yellow flower	2.235
SRP173429	SRR8316895	Juvenile bud stage	23.972
	SRR8316896	Juvenile bud stage	22.558
	SRR8316897	Juvenile bud stage	11.731
	SRR8316894	Third green stage	8.790
	SRR8316900	Third green stage	22.853
	SRR8316901	Third green stage	16.910
	SRR8316898	Complete white stage	2.285
	SRR8316899	Complete white stage	13.726
	SRR8316903	Complete white stage	2.894
	SRR8316902	Silver flowering stage	0.499
	SRR8316904	Silver flowering stage	0.641
	SRR8316905	Silver flowering stage	0.593
	SRR8316906	Gold flowering stage	0.385
	SRR8316907	Gold flowering stage	0.161
	SRR8316908	Gold flowering stage	0.755
SRP132670	SRR6706286	Control	8.266
	SRR6706287	Light intensity 50%	8.049
	SRR6706288	Light intensity 20%	9.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.505
	CNS0095593	Slightly white alabastrum(diploid) 2	12.580
	CNS0095594	Slightly white alabastrum(diploid) 3	10.942
	CNS0095595	Whole white alabastrum(diploid) 2	10.550
	CNS0095596	Whole white alabastrum(diploid) 3	10.102
	CNS0095597	Whole white alabastrum(diploid) 4	7.809
	CNS0095598	Silvery flower (diploied) 1	21.698
	CNS0095599	Silvery flower (diploied) 2	15.901
	CNS0095600	Silvery flower (diploied) 3	4.678
	CNS0095601	Golden flower (diploid) 1	18.123
	CNS0095602	Golden flower (diploid) 2	8.696
	CNS0095603	Golden flower (diploid) 3	8.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.321
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.511
	CNS0095610	Silvery flower (tetraploid) 1	4.787
	CNS0095611	Silvery flower (tetraploid) 2	7.714
	CNS0095612	Silvery flower (tetraploid) 3	3.190
	CNS0095613	Golden flower (tetraploid) 1	1.083
	CNS0095614	Golden flower (tetraploid) 2	1.727
	CNS0095615	Golden flower (tetraploid) 3	1.021
CRA001975	CRR073297	Stem 1	20.938
	CRR073298	Stem 2	16.647
	CRR073299	Stem 3	22.384
	CRR073300	Leaf 1	8.480
	CRR073301	Leaf 2	8.878
	CRR073302	Leaf 3	10.059
	CRR073303	Juvenile bud 1	7.894
	CRR073304	Juvenile bud 2	6.166
	CRR073305	Juvenile bud 3	8.237
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.272
	CRR073308	Third green 3	0.267
	CRR073309	Second white 1	0.260
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.021
	CRR073313	Silver flowering 2	0.235
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	45.541
	CRR073316	Gold flowering 2	55.682
	CRR073317	Gold flowering 3	27.521
	CRR073318	Tawny withering 1	6.685
	CRR073319	Tawny withering 2	8.361
	CRR073320	Tawny withering 3	5.859