Gene detail

Detail information of GWHGAAZE030477

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002298064.1	hypothetical protein POPTR_0001s08770g [Populus trichocarpa]
COG	YP_007143371.1	translation elongation factor Tu
Swissprot	tr\|P46280\|EFTU2_SOYBN	Elongation factor Tu, chloroplastic (Precursor)
trEMBL	tr\|B9GKN8\|B9GKN8_POPTR	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}
TAIR10	AT4G20360.1	RAB GTPase homolog E1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44185806	44187050	+
GWHAAZE00000009	mRNA	44185806	44187050	+
GWHAAZE00000009	exon	44185806	44187050	+
GWHAAZE00000009	CDS	44185806	44187050	+

Transcript Sequence
>GWHTAAZE030511 CACCTTACGGTCCGTGCCGCCCGGGGCAAATTCGAGCGCAAGAAACCCCACGTCAACATCGGAACCATCGGCCACGTCGACCACGGCAAGACCACCCTTACCGCCGCCCTCACCATGGCCCTTGCCTCCACCGGCGGCGGCGCCCCCAAGAAATACGACGAAATAGACGCCGCTCCCGAGGAACGCGCCCGTGGCATCACCATCAACACCGCCACTGTCGAGTACGAGACCGACAACCGCCACTACGCCCACGTCGACTGCCCTGGACACGCCGACTACGTCAAGAACATGATCACCGGAGCCGCCCAGATGGACGGCGCCATTTTAGTTGTCTCCGGTGCAGATGGCCCCATGCCCCAAACCAAAGAACACATCCTTCTCGCCAAGCAAGTCGGAGTTCCCAATGTTGTAGTCTTCCTCAACAAACAAGACCAAGTCGACGACGAGGAACTTCTTGAATTAGTAGAATTGGAGGTCCGAGAGTTGCTTACGGCCTACGAATTCCCCGGAGACGATGTACCCATCGTCTCGGGGTCCGCCCTTCTGGCATTAGAAGCATTAATGACAAACCCTGGCATCAAAAGGGGCGAGAATCAGTGGGTTGACAAAATTTACAAACTAATGGACAATGTTGATGAATACATCCCAATTCCCCAACGCCAAACAGAACTCCCATTTCTCCTTGCCATTGAGGATGTTTTCTCCATTACGGGTCGGGGCACCGTTGCCACGGGTCGGGTTGAGAGGGGAACCGTTAAGGTCGGTGAGACTGTTGACATTGTGGGTCTAAAAGATACAAGAAACACCACTGTCACTGGTGTTGAAATGTTTCAAAAGATTCTTGATGAGGCCATGGCTGGTGACAATGTGGGGATTTTGTTGAGGGGGATTCAAAAGATTGATATACAGAGAGGGATGGTATTGTCAAAACCAGGGTCAATTACACCTCACACTAAGTTTGAGGCGGTTGTTTACGTGTTGAAGAAGGAAGAGGGAGGGAGGCATTCGCCCTTTTTTGCGGGTTATAGGCCTCAGTTTTATTTGAGGACTACTGATGTTACGGGGAAAGTGACTTCCATCATGAATGATAAGGATGAAGAGTCTAAGATGGTTATGCCCGGTGATCGGGTGAAGATAATCGTGGAGCTAATAATGCCGGTTGCTTGTGAGCAAGGGATGAGGTTTGCTATCAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATTCAGGCCATTATTGAATGA

Network for GWHGAAZE030477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	15	216	6.50E-55
PF03144.26	GTP_EFTU_D2	240	308	8.10E-18
PF03143.18	GTP_EFTU_D3	313	412	8.10E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02358	tuf, TUFM	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003746	molecular_function	translation elongation factor activity
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.087
	SRR3591706	second leaf	67.942
	SRR3591707	mature leaf	25.998
	SRR3591708	Shoot apex	44.246
	SRR3591709	Stem	8.084
	SRR3591710	White floral bud	17.514
	SRR3591711	White flower	32.462
	SRR3591712	Green floral bud	20.928
	SRR3591713	Yellow flower	24.671
SRP173429	SRR8316895	Juvenile bud stage	17.394
	SRR8316896	Juvenile bud stage	18.096
	SRR8316897	Juvenile bud stage	10.132
	SRR8316894	Third green stage	8.266
	SRR8316900	Third green stage	28.146
	SRR8316901	Third green stage	20.431
	SRR8316898	Complete white stage	5.431
	SRR8316899	Complete white stage	12.478
	SRR8316903	Complete white stage	9.548
	SRR8316902	Silver flowering stage	10.945
	SRR8316904	Silver flowering stage	13.627
	SRR8316905	Silver flowering stage	9.292
	SRR8316906	Gold flowering stage	25.023
	SRR8316907	Gold flowering stage	34.314
	SRR8316908	Gold flowering stage	24.124
SRP132670	SRR6706286	Control	37.415
	SRR6706287	Light intensity 50%	32.971
	SRR6706288	Light intensity 20%	33.550
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.673
	CNS0095593	Slightly white alabastrum(diploid) 2	13.736
	CNS0095594	Slightly white alabastrum(diploid) 3	9.981
	CNS0095595	Whole white alabastrum(diploid) 2	12.808
	CNS0095596	Whole white alabastrum(diploid) 3	12.578
	CNS0095597	Whole white alabastrum(diploid) 4	11.346
	CNS0095598	Silvery flower (diploied) 1	26.235
	CNS0095599	Silvery flower (diploied) 2	25.251
	CNS0095600	Silvery flower (diploied) 3	29.891
	CNS0095601	Golden flower (diploid) 1	20.855
	CNS0095602	Golden flower (diploid) 2	31.101
	CNS0095603	Golden flower (diploid) 3	28.953
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.509
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.129
	CNS0095610	Silvery flower (tetraploid) 1	35.664
	CNS0095611	Silvery flower (tetraploid) 2	38.059
	CNS0095612	Silvery flower (tetraploid) 3	21.682
	CNS0095613	Golden flower (tetraploid) 1	34.839
	CNS0095614	Golden flower (tetraploid) 2	49.095
	CNS0095615	Golden flower (tetraploid) 3	47.354
CRA001975	CRR073297	Stem 1	45.004
	CRR073298	Stem 2	35.600
	CRR073299	Stem 3	53.222
	CRR073300	Leaf 1	18.971
	CRR073301	Leaf 2	23.614
	CRR073302	Leaf 3	18.905
	CRR073303	Juvenile bud 1	22.838
	CRR073304	Juvenile bud 2	17.213
	CRR073305	Juvenile bud 3	30.298
	CRR073306	Third green 1	15.940
	CRR073307	Third green 2	10.425
	CRR073308	Third green 3	15.198
	CRR073309	Second white 1	18.946
	CRR073310	Second white 2	10.846
	CRR073311	Second white 3	11.668
	CRR073312	Silver flowering 1	15.729
	CRR073313	Silver flowering 2	18.460
	CRR073314	Silver flowering 3	19.009
	CRR073315	Gold flowering 1	109.372
	CRR073316	Gold flowering 2	135.461
	CRR073317	Gold flowering 3	184.157
	CRR073318	Tawny withering 1	17.727
	CRR073319	Tawny withering 2	16.684
	CRR073320	Tawny withering 3	19.369