Detail information of GWHGAAZE030481


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006439919.10hypothetical protein CICLE_v10024152mg [Citrus clementina]
trEMBLtr|V4VKE2|V4VKE2_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR53159.1}
TAIR10AT4G24690.15E-110ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4423587844238695-
GWHAAZE00000009mRNA4423587844238695-
GWHAAZE00000009exon4423587844235976-
GWHAAZE00000009exon4423609744236693-
GWHAAZE00000009exon4423677844236927-
GWHAAZE00000009exon4423710744237340-
GWHAAZE00000009exon4423742844237551-
GWHAAZE00000009exon4423763844238695-
GWHAAZE00000009CDS4423763844238695-
GWHAAZE00000009CDS4423742844237551-
GWHAAZE00000009CDS4423710744237340-
GWHAAZE00000009CDS4423677844236927-
GWHAAZE00000009CDS4423609744236693-
GWHAAZE00000009CDS4423587844235976-
Transcript Sequence

Network for GWHGAAZE030481

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0293


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00564.25PB13566.80E-07
PF00569.18ZZ3313665.00E-09
PF16158.6N_BRCA1_IG4225236.00E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17987NBR1 Mitophagy - animal map04137

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf108.938
SRR3591706second leaf55.896
SRR3591707mature leaf49.423
SRR3591708Shoot apex54.239
SRR3591709Stem162.791
SRR3591710White floral bud187.530
SRR3591711White flower327.318
SRR3591712Green floral bud146.302
SRR3591713Yellow flower236.320
SRP173429 SRR8316895Juvenile bud stage 60.940
SRR8316896Juvenile bud stage 89.127
SRR8316897Juvenile bud stage 44.336
SRR8316894Third green stage 38.308
SRR8316900Third green stage 120.663
SRR8316901Third green stage 113.772
SRR8316898Complete white stage 61.398
SRR8316899Complete white stage 154.857
SRR8316903Complete white stage 123.566
SRR8316902Silver flowering stage97.871
SRR8316904Silver flowering stage127.706
SRR8316905Silver flowering stage67.248
SRR8316906Gold flowering stage 293.952
SRR8316907Gold flowering stage 272.954
SRR8316908Gold flowering stage 286.023
SRP132670SRR6706286Control148.440
SRR6706287Light intensity 50%143.118
SRR6706288Light intensity 20%148.582
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.199
CNS0095593Slightly white alabastrum(diploid) 265.590
CNS0095594Slightly white alabastrum(diploid) 364.521
CNS0095595Whole white alabastrum(diploid) 267.645
CNS0095596Whole white alabastrum(diploid) 355.259
CNS0095597Whole white alabastrum(diploid) 462.707
CNS0095598Silvery flower (diploied) 189.290
CNS0095599Silvery flower (diploied) 290.371
CNS0095600Silvery flower (diploied) 3239.833
CNS0095601Golden flower (diploid) 188.099
CNS0095602Golden flower (diploid) 2205.711
CNS0095603Golden flower (diploid) 3197.559
CNS0095604Slightly white alabastrum(tetraploid) 165.635
CNS0095605Slightly white alabastrum(tetraploid) 254.699
CNS0095606Slightly white alabastrum(tetraploid) 3100.488
CNS0095607Whole white alabastrum(tetraploid) 157.176
CNS0095608Whole white alabastrum(tetraploid) 248.719
CNS0095609Whole white alabastrum(tetraploid) 399.586
CNS0095610Silvery flower (tetraploid) 1236.078
CNS0095611Silvery flower (tetraploid) 2242.507
CNS0095612Silvery flower (tetraploid) 3173.962
CNS0095613Golden flower (tetraploid) 1145.278
CNS0095614Golden flower (tetraploid) 2201.789
CNS0095615Golden flower (tetraploid) 3325.308
CRA001975CRR073297Stem 198.825
CRR073298Stem 296.496
CRR073299Stem 3113.521
CRR073300Leaf 1141.125
CRR073301Leaf 2132.643
CRR073302Leaf 3117.386
CRR073303Juvenile bud 1186.697
CRR073304Juvenile bud 2142.671
CRR073305Juvenile bud 3246.186
CRR073306Third green 1180.212
CRR073307Third green 2151.421
CRR073308Third green 3162.560
CRR073309Second white 1212.074
CRR073310Second white 2244.414
CRR073311Second white 3231.082
CRR073312Silver flowering 1186.893
CRR073313Silver flowering 2184.026
CRR073314Silver flowering 3163.643
CRR073315Gold flowering 172.087
CRR073316Gold flowering 2110.565
CRR073317Gold flowering 372.337
CRR073318Tawny withering 1104.465
CRR073319Tawny withering 280.518
CRR073320Tawny withering 384.521