Gene detail

Detail information of GWHGAAZE030494

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002321627.1	6.9801E-113	hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	3E-75	Transcription factor MYB86
trEMBL	tr\|B9IEX5\|B9IEX5_POPTR	3E-113	Uncharacterized protein {ECO:0000313\|EMBL:EEF05754.1}
TAIR10	AT5G26660.1	4E-63	myb domain protein 86

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44396628	44397774	-
GWHAAZE00000009	mRNA	44396628	44397774	-
GWHAAZE00000009	exon	44396628	44397321	-
GWHAAZE00000009	exon	44397430	44397559	-
GWHAAZE00000009	exon	44397642	44397774	-
GWHAAZE00000009	CDS	44397642	44397774	-
GWHAAZE00000009	CDS	44397430	44397559	-
GWHAAZE00000009	CDS	44396628	44397321	-

Transcript Sequence
>GWHTAAZE030528 ATGGGCCGCCATTCTTCTTGTCCAAAGCTAAAAATAAGAAAAGGGTTATGGTCACCAGATGAAGATGAAAAACTCTTCAATCACATTACTCAATTCGGCATTGGTTGCTGGAGCTCCGTTCCCAAATTAGCTGGTTTGCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATAAACTACTTGAGGCCTGATCTTAAGAGAGGAATGTTTTCACAAGAAGAGGAACAACTCATACTTGGTTTGCATGAACTTTTGGGCAACAGGTGGGCCCAAATTGCGGCGCGATTACCGGGAAGAACGGATAATGAGATTAAGAATTTTTGGAATTCCTACTTAAAGAAAAAGCTAATCAAGGAAGGGATTGATCCCAACACCCACAAGCCATTTATCAAAACAAAGGATAAAGATGAAAAGAATTCTGCAAGTAGAGCCTATATATCTAACCAGCCATTTCAACTGAGCAATTCAACACAAGATCTAATGGGGCATTCTAATTCTATGAGCAAAACAGTCCTTGACCCTTCATTTCCACTTGAATTTCAAGCGGGTCTCGATCTAGTTGGGTACAATTCATATTTTCAGTTCAATTCAATGCCAAATTTAACCAACTTCGATCTTTCTGAAGATTCGAGTTTGATGATGAGTCCGCTTTTGTTGACCGAGGTAAAGGAAAGCTCAAGTGGTAGTTGCAATAATAGTGTCACTGTTGATAATGCCATTGCAACGTTTCAAGTGAACAGTGTTGTTGAAAATGGAAGTACAAGATTTTCTTGGGACAATAGTGATAACAAATATGAAACAATGGTGGAGTTGAATGGGATCAAATGTGAAGAAACGAAGCCAAGTATGTGGGAATTTGAAGGGCAGCTTCATGGTAATAACAATTCACAAGATTTCACTAGTTATCTATCGGATAATCTAGTAGGGGCTAGCCTCAATGGATTCCACCAGATATGA

Network for GWHGAAZE030494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.50E-12
PF00249.32	Myb_DNA-binding	67	112	9.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.081
	SRR3591706	second leaf	1.200
	SRR3591707	mature leaf	0.623
	SRR3591708	Shoot apex	3.353
	SRR3591709	Stem	17.078
	SRR3591710	White floral bud	2.219
	SRR3591711	White flower	0.551
	SRR3591712	Green floral bud	0.395
	SRR3591713	Yellow flower	0.083
SRP173429	SRR8316895	Juvenile bud stage	0.597
	SRR8316896	Juvenile bud stage	0.465
	SRR8316897	Juvenile bud stage	0.080
	SRR8316894	Third green stage	0.164
	SRR8316900	Third green stage	0.782
	SRR8316901	Third green stage	0.361
	SRR8316898	Complete white stage	1.368
	SRR8316899	Complete white stage	3.328
	SRR8316903	Complete white stage	2.153
	SRR8316902	Silver flowering stage	0.461
	SRR8316904	Silver flowering stage	0.918
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	0.170
	SRR8316907	Gold flowering stage	0.247
	SRR8316908	Gold flowering stage	0.186
SRP132670	SRR6706286	Control	0.638
	SRR6706287	Light intensity 50%	0.321
	SRR6706288	Light intensity 20%	0.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.892
	CNS0095593	Slightly white alabastrum(diploid) 2	0.525
	CNS0095594	Slightly white alabastrum(diploid) 3	0.555
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.157
	CNS0095597	Whole white alabastrum(diploid) 4	0.360
	CNS0095598	Silvery flower (diploied) 1	0.922
	CNS0095599	Silvery flower (diploied) 2	0.873
	CNS0095600	Silvery flower (diploied) 3	0.708
	CNS0095601	Golden flower (diploid) 1	0.406
	CNS0095602	Golden flower (diploid) 2	0.719
	CNS0095603	Golden flower (diploid) 3	0.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.615
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.207
	CNS0095610	Silvery flower (tetraploid) 1	2.300
	CNS0095611	Silvery flower (tetraploid) 2	0.838
	CNS0095612	Silvery flower (tetraploid) 3	0.096
	CNS0095613	Golden flower (tetraploid) 1	0.114
	CNS0095614	Golden flower (tetraploid) 2	0.063
	CNS0095615	Golden flower (tetraploid) 3	0.073
CRA001975	CRR073297	Stem 1	1.054
	CRR073298	Stem 2	1.254
	CRR073299	Stem 3	0.400
	CRR073300	Leaf 1	0.098
	CRR073301	Leaf 2	0.167
	CRR073302	Leaf 3	0.083
	CRR073303	Juvenile bud 1	0.340
	CRR073304	Juvenile bud 2	0.066
	CRR073305	Juvenile bud 3	0.328
	CRR073306	Third green 1	0.168
	CRR073307	Third green 2	0.372
	CRR073308	Third green 3	0.764
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	5.381
	CRR073319	Tawny withering 2	2.815
	CRR073320	Tawny withering 3	4.381