Gene detail

Detail information of GWHGAAZE030495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12749.1	0	unnamed protein product [Coffea canephora]
COG	YP_008089142.1	6E-57	Deacetylases, including yeast histone deacetylase and acetoin utilization protein
Swissprot	tr\|Q9FML2\|HDA6_ARATH	0	Histone deacetylase 6
trEMBL	tr\|A0A068UWY6\|A0A068UWY6_COFCA	0	Histone deacetylase {ECO:0000256\|PIRNR:PIRNR037913}
TAIR10	AT5G63110.1	0	histone deacetylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44407056	44412980	+
GWHAAZE00000009	mRNA	44407056	44412980	+
GWHAAZE00000009	exon	44407056	44407667	+
GWHAAZE00000009	exon	44409580	44410020	+
GWHAAZE00000009	exon	44410102	44410244	+
GWHAAZE00000009	exon	44412520	44412759	+
GWHAAZE00000009	exon	44412914	44412980	+
GWHAAZE00000009	CDS	44407056	44407667	+
GWHAAZE00000009	CDS	44409580	44410020	+
GWHAAZE00000009	CDS	44410102	44410244	+
GWHAAZE00000009	CDS	44412520	44412759	+
GWHAAZE00000009	CDS	44412914	44412980	+

Transcript Sequence
>GWHTAAZE030529 ATGGACGAATCGTCGTTAGGAGGCGCATCCCTCCCGTCCGGCCCCGACGGCACAAAACGGCGAGTATCATACTTCTACGAGCCCTCAATCGGCGACTACTACTACGGCCAAGGCCACCCAATGAAACCCCACCGCATTCGTATGGCCCACAACCTCATCGTTCACTACTCCCTCCACCGCCGCATGGAGATCCTCCGCCCTTTCCCCGCCGAACCCCAAGATATCCGCCGCTTCCACTCCCCCGACTACGTCGACTTCCTCTCCTCCGTCTCCCCTCAATCCCTCCACGACCACACTCACACCCGCCAACTCAAGAGATTTAATGTGGGCGAAGATTGTCCCGTCTTTGATGGGCTTTTCGAATTTTGTCAATCTTCTGCCGGGGGTTCCATTGGGGCTGCGGTGAAGCTGAATAGGCAGGATGCGGATATTGCGGTCAACTGGGCGGGGGGTTTGCATCATGCGAAAAAGTCTGAGGCGTCTGGTTTTTGTTATGTTAATGATATTGTGCTCGGGATTCTTGAGCTCCTCAAGGTTCACAGGGTATATTTACTTTCTCTAATCTCTATTTTGTTTTGCACTAGTGACGCATTCTTTGATTATTTCGTTTTGCGTGTGTTGTATGTAGATATTGACATCCACCATGGAGATGGTGTTGAGGAGGCATTTTTCACCACTGACAGAGTAATGACTGTATCTTTTCACAAATTCGGGGACTTCTTTCCAGGGACTGGGCACATTAAAGACATCGGAGTAGGCAACGGAAAGAACTATGCCCTAAATGTCCCATTAAATGATGGAATGGATGATGATAGTTTCCGTGGTCTATTTCGACCGATCATCCAAAAAGTTATGGGCCTTTACCAACCAGACGCAGTTGTTCTCCAATGCGGAGCCGATTCATTGGCTGGTGATAGGTTGGGTTGCTTCAACTTGTCAGTGAAAGGCCATGCTGATTGCCTTCGTTTCATTAGATCTTTCAACGTTCCTCTTATGGTCTTAGGTGGGGGTGGGTATACGATCCGAAATGTTGCTAGATGCTGGTGCTATGAGACAGCAGTTGCAGTTGGGGTGGAACCTGATAATAAATTGCCTTACAATGAATACTACGAGTACTTTGGACCAGATTACACTCTTCATGTTGAACCGAGCCCCATTGATAATCAGAACTCGGCCAAAGATTTGGAGAAAATCAGGAACATTCTGTTGGAGCAAGTTTCTAGATTACCCCATGCACCCAGCGTACCATTCCAAACAACACCACCCACAACCCAAGTTCCAGAAGAGGCAGAGGAGAAGATGGATCGAAGACCAAAACCTCGCATTTGGAATGGCGAGGGTGAGGATTATGAGTCTGATGCTGATGAAGATGTCAAGCCTCTACGTCAAACCATAGATACTGATGGTTGGCCCTTGCCAAATGCTGCTAATATGAGGGATAATAAAGCTGGTATAAAAGACGAGAAGATGACGGATGTGCATCAACCATCTCGACCTAGATGA

Network for GWHGAAZE030495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00850.20	Hist_deacetyl	39	353	1.40E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06067	HDAC1_2	Notch signaling pathway	map04330
		Cell cycle	map04110
		Thyroid hormone signaling pathway	map04919
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0016575	biological_process	histone deacetylation
GO:0004407	molecular_function	histone deacetylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.882
	SRR3591706	second leaf	18.000
	SRR3591707	mature leaf	20.053
	SRR3591708	Shoot apex	38.278
	SRR3591709	Stem	38.554
	SRR3591710	White floral bud	32.619
	SRR3591711	White flower	35.057
	SRR3591712	Green floral bud	40.566
	SRR3591713	Yellow flower	23.968
SRP173429	SRR8316895	Juvenile bud stage	31.321
	SRR8316896	Juvenile bud stage	50.406
	SRR8316897	Juvenile bud stage	19.478
	SRR8316894	Third green stage	16.702
	SRR8316900	Third green stage	45.020
	SRR8316901	Third green stage	47.325
	SRR8316898	Complete white stage	10.608
	SRR8316899	Complete white stage	39.684
	SRR8316903	Complete white stage	21.342
	SRR8316902	Silver flowering stage	11.384
	SRR8316904	Silver flowering stage	14.438
	SRR8316905	Silver flowering stage	7.602
	SRR8316906	Gold flowering stage	27.089
	SRR8316907	Gold flowering stage	24.231
	SRR8316908	Gold flowering stage	28.332
SRP132670	SRR6706286	Control	46.205
	SRR6706287	Light intensity 50%	40.234
	SRR6706288	Light intensity 20%	37.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.969
	CNS0095593	Slightly white alabastrum(diploid) 2	41.588
	CNS0095594	Slightly white alabastrum(diploid) 3	48.188
	CNS0095595	Whole white alabastrum(diploid) 2	45.687
	CNS0095596	Whole white alabastrum(diploid) 3	48.141
	CNS0095597	Whole white alabastrum(diploid) 4	46.203
	CNS0095598	Silvery flower (diploied) 1	41.734
	CNS0095599	Silvery flower (diploied) 2	31.564
	CNS0095600	Silvery flower (diploied) 3	38.922
	CNS0095601	Golden flower (diploid) 1	39.921
	CNS0095602	Golden flower (diploid) 2	48.711
	CNS0095603	Golden flower (diploid) 3	46.146
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.797
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.249
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.804
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.880
	CNS0095610	Silvery flower (tetraploid) 1	27.332
	CNS0095611	Silvery flower (tetraploid) 2	40.733
	CNS0095612	Silvery flower (tetraploid) 3	24.664
	CNS0095613	Golden flower (tetraploid) 1	19.242
	CNS0095614	Golden flower (tetraploid) 2	32.994
	CNS0095615	Golden flower (tetraploid) 3	24.542
CRA001975	CRR073297	Stem 1	41.885
	CRR073298	Stem 2	35.708
	CRR073299	Stem 3	36.171
	CRR073300	Leaf 1	42.774
	CRR073301	Leaf 2	42.100
	CRR073302	Leaf 3	33.720
	CRR073303	Juvenile bud 1	34.084
	CRR073304	Juvenile bud 2	24.577
	CRR073305	Juvenile bud 3	36.641
	CRR073306	Third green 1	8.797
	CRR073307	Third green 2	7.584
	CRR073308	Third green 3	9.315
	CRR073309	Second white 1	12.475
	CRR073310	Second white 2	8.671
	CRR073311	Second white 3	7.803
	CRR073312	Silver flowering 1	6.858
	CRR073313	Silver flowering 2	7.016
	CRR073314	Silver flowering 3	6.667
	CRR073315	Gold flowering 1	16.263
	CRR073316	Gold flowering 2	19.263
	CRR073317	Gold flowering 3	14.669
	CRR073318	Tawny withering 1	32.740
	CRR073319	Tawny withering 2	29.944
	CRR073320	Tawny withering 3	30.430