Detail information of GWHGAAZE030498


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011101342.11.22933E-65PREDICTED: LOB domain-containing protein 25-like [Sesamum indicum]
Swissprottr|Q9FML4|LOB_ARATH4E-53Protein LATERAL ORGAN BOUNDARIES
trEMBLtr|A0A061FUD5|A0A061FUD5_THECC2E-64Lateral organ boundaries domain family protein {ECO:0000313|EMBL:EOY20851.1}
TAIR10AT5G63090.44E-43Lateral organ boundaries (LOB) domain family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4442815644428680+
GWHAAZE00000009mRNA4442815644428680+
GWHAAZE00000009exon4442815644428680+
GWHAAZE00000009CDS4442815644428680+
Transcript Sequence

Network for GWHGAAZE030498

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB2851.60E-31
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.133
SRR3591706second leaf0.000
SRR3591707mature leaf0.243
SRR3591708Shoot apex2.569
SRR3591709Stem0.455
SRR3591710White floral bud2.722
SRR3591711White flower4.269
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.304
SRP173429 SRR8316895Juvenile bud stage 0.295
SRR8316896Juvenile bud stage 0.088
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.129
SRR8316900Third green stage 0.102
SRR8316901Third green stage 0.049
SRR8316898Complete white stage 0.182
SRR8316899Complete white stage 0.959
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.201
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.077
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.480
SRR6706287Light intensity 50%0.461
SRR6706288Light intensity 20%0.338
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.054
CNS0095593Slightly white alabastrum(diploid) 20.477
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.200
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 12.055
CNS0095599Silvery flower (diploied) 22.003
CNS0095600Silvery flower (diploied) 30.426
CNS0095601Golden flower (diploid) 11.274
CNS0095602Golden flower (diploid) 20.915
CNS0095603Golden flower (diploid) 31.096
CNS0095604Slightly white alabastrum(tetraploid) 11.240
CNS0095605Slightly white alabastrum(tetraploid) 21.388
CNS0095606Slightly white alabastrum(tetraploid) 33.174
CNS0095607Whole white alabastrum(tetraploid) 10.192
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.119
CNS0095611Silvery flower (tetraploid) 21.297
CNS0095612Silvery flower (tetraploid) 30.479
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.772
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.054
CRR073298Stem 20.174
CRR073299Stem 30.220
CRR073300Leaf 10.194
CRR073301Leaf 20.407
CRR073302Leaf 30.727
CRR073303Juvenile bud 10.011
CRR073304Juvenile bud 20.685
CRR073305Juvenile bud 30.951
CRR073306Third green 10.000
CRR073307Third green 20.618
CRR073308Third green 30.568
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.108
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.522
CRR073320Tawny withering 30.000