Gene detail

Detail information of GWHGAAZE030500

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010251124.1	PREDICTED: AP-1 complex subunit mu-2 [Nelumbo nucifera]
Swissprot	tr\|O22715\|AP1M2_ARATH	AP-1 complex subunit mu-2
trEMBL	tr\|D7SYS4\|D7SYS4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23375.3}
TAIR10	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44472174	44476332	+
GWHAAZE00000009	mRNA	44472174	44476332	+
GWHAAZE00000009	exon	44472174	44472356	+
GWHAAZE00000009	exon	44473177	44473323	+
GWHAAZE00000009	exon	44473429	44473491	+
GWHAAZE00000009	exon	44473588	44473764	+
GWHAAZE00000009	exon	44473850	44473953	+
GWHAAZE00000009	exon	44474934	44475041	+
GWHAAZE00000009	exon	44475160	44475256	+
GWHAAZE00000009	exon	44475408	44475505	+
GWHAAZE00000009	exon	44475720	44475861	+
GWHAAZE00000009	exon	44475967	44476089	+
GWHAAZE00000009	exon	44476234	44476332	+
GWHAAZE00000009	CDS	44472174	44472356	+
GWHAAZE00000009	CDS	44473177	44473323	+
GWHAAZE00000009	CDS	44473429	44473491	+
GWHAAZE00000009	CDS	44473588	44473764	+
GWHAAZE00000009	CDS	44473850	44473953	+
GWHAAZE00000009	CDS	44474934	44475041	+
GWHAAZE00000009	CDS	44475160	44475256	+
GWHAAZE00000009	CDS	44475408	44475505	+
GWHAAZE00000009	CDS	44475720	44475861	+
GWHAAZE00000009	CDS	44475967	44476089	+
GWHAAZE00000009	CDS	44476234	44476332	+

Transcript Sequence
>GWHTAAZE030534 ATTTTCTTACATTACAAATACTCTCATCTTGTAAATGATCTTCATCGCAGTTATTCGGCAATGGCGGCCTCGGCGCTATTTATATTGGATATCAAGGGCCGAATATTGATTAGTCGCGATTATCGAGGCGAGGTCTCAGCCGTTCAGGCGGAGCGATTCTTCTCCAAGATCCTTGAGAAAGAGGGTGATGTAGAGTCCCAGGGTCCAGTGAGATATGACAGTGGTGTGACCTACATGTTTATACAACACAACAATGTTTACTTGATGACAGCATCAAGGCATAACTGCAATGCTGCTAGCCTCCTCATCTTTTTGCACCGCGTAGTTGATGTTTGTAAGCAATATTTTGAAGAGTTGGAAGAGGAGTCCCTAAGAGATAATTTTGTAGTAGTGTATGAATTACTTGATGAAATGATGGACTTTGGCTACCCTCAATATACAGAAGCCAACATTCTAAGTGAGTTTATCAAGGTTGACGCTTATAGGTTGGAAGTTACACAGCGTCCTCCAATGGCTTTAACAAATGCAGTGTCTTGGCGGAGTGAAGGGATTTTTTACAAGAAAAATGAAGTGTTTTTGGATGTGGTGGAAAGCGCCAATATGCTAGTTAATAGCAATGGCCAAATAATCCGTTCAGATATTGTTGGGGCATTAAAGATGAGAACATATTTGAGTGGTATGCCCGAGTGTAAGCTTGGCCTTAATGACAGAATTTTATTGGAGGCTCAAGGTGGATCAACAAAAGGAAAAGCCATTGATCTGGAGGACATCAAATTTCATCAGTGTGTACGTTTGGCTCGGTTTGAAAATGACCGGACGATATCTTTCATACCCCCTGATGGATCATTTGATCTAATGACATATAGACTCAGTTCCCAGGTGAAACCTCTCATTTGGGTGGAAGCACAAATTGAAAGGCATGCAAGAAGTCGGGTTGAGATGTTGGTAAAAGCCAGGAGCCAATTCAGGGAGCGTAGCTCTGCAATGAATGTTGAAATTGAGTTGCCTGTCCCATCTGATGCTACAAATCCTAATGTGCGGACATCAATGGGATCAGCTAAATATGCTCCTGAAAAAGATGCATTGTTGTGGAAGATTAAATCTTTTCCTGGTAATAAGGAATATATGTTAAGTGCAGAGTTCAGACTTCCTAGTATAACTTGTGAAGAAACGGCTCCTGACAGAAAAGCTCCAATTCGCGTGCAGTTTGAAATACCATATTTTACTGTCTCGGGAATTCAGGTTCGTTATCTGAAAATTATCGAGAAGAGCGGATACCAGGCACTTCCGTGGGTGAGATATATAACAATGGCCGGCGAGTATGAACTAAGACTAATTTAA

Network for GWHGAAZE030500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.21	Clat_adaptor_s	25	150	1.60E-06
PF00928.22	Adap_comp_sub	177	444	7.30E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12393	AP1M	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.515
	SRR3591706	second leaf	3.634
	SRR3591707	mature leaf	3.153
	SRR3591708	Shoot apex	7.529
	SRR3591709	Stem	8.807
	SRR3591710	White floral bud	6.373
	SRR3591711	White flower	4.461
	SRR3591712	Green floral bud	16.740
	SRR3591713	Yellow flower	2.914
SRP173429	SRR8316895	Juvenile bud stage	9.748
	SRR8316896	Juvenile bud stage	18.279
	SRR8316897	Juvenile bud stage	12.007
	SRR8316894	Third green stage	7.522
	SRR8316900	Third green stage	22.294
	SRR8316901	Third green stage	22.453
	SRR8316898	Complete white stage	4.182
	SRR8316899	Complete white stage	9.538
	SRR8316903	Complete white stage	4.780
	SRR8316902	Silver flowering stage	2.862
	SRR8316904	Silver flowering stage	4.110
	SRR8316905	Silver flowering stage	1.865
	SRR8316906	Gold flowering stage	5.941
	SRR8316907	Gold flowering stage	5.975
	SRR8316908	Gold flowering stage	5.865
SRP132670	SRR6706286	Control	7.100
	SRR6706287	Light intensity 50%	7.711
	SRR6706288	Light intensity 20%	7.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.249
	CNS0095593	Slightly white alabastrum(diploid) 2	14.406
	CNS0095594	Slightly white alabastrum(diploid) 3	15.632
	CNS0095595	Whole white alabastrum(diploid) 2	20.782
	CNS0095596	Whole white alabastrum(diploid) 3	27.708
	CNS0095597	Whole white alabastrum(diploid) 4	22.159
	CNS0095598	Silvery flower (diploied) 1	4.884
	CNS0095599	Silvery flower (diploied) 2	6.706
	CNS0095600	Silvery flower (diploied) 3	4.725
	CNS0095601	Golden flower (diploid) 1	5.547
	CNS0095602	Golden flower (diploid) 2	4.242
	CNS0095603	Golden flower (diploid) 3	4.889
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.388
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.449
	CNS0095610	Silvery flower (tetraploid) 1	5.508
	CNS0095611	Silvery flower (tetraploid) 2	6.294
	CNS0095612	Silvery flower (tetraploid) 3	6.534
	CNS0095613	Golden flower (tetraploid) 1	4.822
	CNS0095614	Golden flower (tetraploid) 2	4.974
	CNS0095615	Golden flower (tetraploid) 3	3.603
CRA001975	CRR073297	Stem 1	8.246
	CRR073298	Stem 2	8.124
	CRR073299	Stem 3	5.904
	CRR073300	Leaf 1	11.057
	CRR073301	Leaf 2	7.853
	CRR073302	Leaf 3	8.896
	CRR073303	Juvenile bud 1	8.476
	CRR073304	Juvenile bud 2	5.038
	CRR073305	Juvenile bud 3	3.558
	CRR073306	Third green 1	1.031
	CRR073307	Third green 2	1.473
	CRR073308	Third green 3	1.370
	CRR073309	Second white 1	1.144
	CRR073310	Second white 2	1.956
	CRR073311	Second white 3	1.166
	CRR073312	Silver flowering 1	0.881
	CRR073313	Silver flowering 2	2.132
	CRR073314	Silver flowering 3	0.749
	CRR073315	Gold flowering 1	2.180
	CRR073316	Gold flowering 2	2.062
	CRR073317	Gold flowering 3	1.903
	CRR073318	Tawny withering 1	5.153
	CRR073319	Tawny withering 2	6.306
	CRR073320	Tawny withering 3	5.391