Gene detail

Detail information of GWHGAAZE030505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004236236.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Solanum lycopersicum]
COG	YP_004775215.1	1E-62	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGR3\|Y4265_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|K4BKB1\|K4BKB1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g112580.2.1}
TAIR10	AT5G56040.2	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44519559	44522961	+
GWHAAZE00000009	mRNA	44519559	44522961	+
GWHAAZE00000009	exon	44519559	44522379	+
GWHAAZE00000009	exon	44522471	44522961	+
GWHAAZE00000009	CDS	44519559	44522379	+
GWHAAZE00000009	CDS	44522471	44522961	+

Transcript Sequence
>GWHTAAZE030539 ATGCCTCTTAATCCATGGACCCTTTTCTTCTCTTCCTCTTTCCTAATATTTTCCCTTTCCCTTTTAATACCTACTTTGGCAATAAACCAACAAGGTGAATCGCTTCTCTTGTGGAAGCAAAGTTTGAAGGGAACGCTAGAGCCCTTGAATAATTGGGACCCTACTGATGAAACTCCATGCGGGTGGTTTGGCATCTCTTGCAACTTCAACAATGAAGTTGAGGAACTCAATTTAAGGTACATGGATTTGTTTGGAAGCGTTCCGTCTAATTTCAGCTTGTTATTGTCGCTCAAACAGCTCACTCTTTCGGGAACGAATCTCACTGGTTCGATCCCAAAAGAGGTCACTGCTCTTCAAGGACTAGAATCCTTAGATTTGAGCGACAATGCCTTGAGCGGTGAAATACCAAGTGAGGTATTTCACTTGCCCAAGCTCGAAAAGCTCTATATCAATTCAAATAGGCTAGAGGGAACCATACCTGCCGAAATAGGTAACCTCACAACCTTGATAGAATTGATCATCTATGATAATCAACTAAGTGGGATTATCCCAATGACAATTGGTAACTTGAAGAAGCTTGAAGTAATAAGAGCTGGTGGCAACAAGAACCTTGAAGGGACACTACCCAATGAAATTGGCAATTGTACCAATTTGGTCATGTTAGGCCTAGCAGAAACTAGCATCTCAGGATTCCTACCTTCCACCCTTGGTCTCCTCAAGAAACTAGAGACAATAGCCATTTACACCACCCTGATCTCCGGTCAAATCCCACCAGAACTCGGGGACTGCAATGCCTTACAAAACATCTACTTGTACGAGAATTCCCTATCAGGGTCAGTCCCAACCCGGTTAGGGAACCTGAAGAACCTTCAAAACCTCTTGCTATGGCAGAACAACTTGGTAGGCACAATCCCACCGGAGCTTGGAAGCTGCAAGCAGTTACTTGTCATCGACTTGTCAATGAATATGTTAACAGGAGGCATTCCAGCCACATTTGGGAACTTAAGCTCATTACAAGAGCTACAGCTGAGCGTGAATCAACTATCGGGTCAAATACCGACTCAAATAGGCGGGTGTTGGAGCATCACTCACATCGAACTTGATAACAATCAAATCACAGGTACTATACCTTGGGAATTTGGAAACCTAGCAAATCTCACTCTATTGTACCTTTGGCAAAATAAGCTTGAAGGGAATATACCTCCTTCTATTTCGTCTTGTCACAGTCTCGAGGCCATTGATTTTTCTCAAAACTCATTGATCGGGTCGATTCCACAAGGTATATTCCAGTTACATAAGCTGAACAAATTGTTGCTACTGTCCAACAATTTGTCCGGTTCCTTACCCCCGGAGATAGGTAACTGCTCGTCATTAATTCGGTTCAGAGCCAACAACAACAAGCTCACCGGATCGATTCCCCAAGAGATGGGGCATTTGAAGAATTTGAATTTCTTAGATCTTGGATCGAACCGGTTAACCGGAGTCATACCGACAGAGTTGTCCGGCTGTAGTAATCTAACGTTTTTGGACTTGCATTCAAACTCGATTGCCGGAAATTTGCCGGCGAATTTAAATCATCTCGTTTCGCTCGAGTTCCTTGATGTCTCGGATAATCTCATTGAAGGTGCATTGAATCCAAGTCTCGGTTCACTGATTTCACTTACTAAACTCATTTTTGGCAATAACCGGTTCACCGGTTCAATTCCAACTCAAATCAGTTCATGCTCGAAGCTTCAGTTGCTTGATCTAAGCAGTAACGATCTCTCTGGTAATATTCCGGCAAGTTTGGGGAAGATTCCGGCGCTGGAGATTGCACTAAACCTCAGCTGGAACCAAATCTCAGGCGAGATTCCGGAGGAATTTGCGGCGCTGGACAAGCTCGGTGTTCTGGATCTGTCTCACAATCAACTCTCCGGTGACCTTCAATATCTCGCGGACCTCCAAAATCTCGTGGTTTTAAACGTCTCGCACAACAATTTCACCGGTCACGTGCCAGACACGTCCTTCTTCGCGAAGCTTCCACTGAGCGTCCTGGCTGGGAATCCGGGCCTGTGCTTCTCAGGCAACCAGTGCGCCGCCGGAAAGGGCGGCGCTTCTAGGCAAGGAAGGATGGCTCGTGTGGCCATGGTGGTGCTACTCTGCGCCGCGTGTGCGCTTCTCCTGGCTGCTCTTTACATCATCCTCGGAGGTAAGAAAAGTAACCGCGGAGATGACGCGTGCGACGTTGACGCGGAGATGGGACCACCTTGGGAGGTCACGCTGTACCAAAAGCTTGACGTGTCACTATGTGACGTGGGCAAATGCTTGACAGCTGGCAACATTCTCGGACAAGGCCGAACCGGCATAGTTTACCGGGCGGATACTCCATCGGGGTTAACCATTGCGGTTAAGAGGTTCCGGTCATCGGAAAAAGCCTCGGAGTCAGCTTTCTTGTCTGAGAATGCCACGCTGGCACGGATTCGGCACCGAAACATCGTTCGATTATTGGGTTGGGCGGCTAATGGAAAAACGAAGCTGTTATTCTATGATTATATGCCTAATGGGACATTAGGTGGACTGTTACACGAGGGGTGCGGAGGATCAGTGGATTGGGAGACTCGATTCAAGATAGCATTGGGAGTAGCAGAAGGTTTAGCGTATTTGCACCATGACTGTGTACCCGCTATCTTGCACAGGGACGTGAAGGCGCACAATATACTTTTGGGGGATTGTTACGAGCCATGTTTGGCTGACTTTGGACTTGCTAGACAAGTTCAGAATGACAATGGTTCATTTTCAGCAAGCCCGCAATTTGCTGGCTCCTATGGCTATTTTGCACCAGAGTATGCTTGCATGCTAAAGATCACCGTAAAGAGCGACGTTTATAGCTATGGCGTAGTTTTGCTGGAAATCATAACTGGAAAAAAACCAGTAGATCCATCATTCCCGGATAGCCAACATGTTATTCAATGGGTACGAGATCACCTAAAGAGCAAAATGGATCCTGTTGACATTATTGACGTGAAGCTCCAAGGCTATCAAGACTCGCAAGTACAAGAAATGCTCCAAGCCCTCGGCATAGCCCTCCTTTGCACTAGCAATCGTGCAGAAGATCGACCAACGATGAAAGATGTTGTAGCATTATTAAGAGAGATTCGACAAGAGGCCGCAGTGGGAAGTGAAACCCAAAAGCCAACTCGCAAGCCTTCAACCGAGGTTATGCAATACTCATCTTCGTCAGTGACCTCGGCTCAATTGTTGCTCCACGGCACAACAAATTGTTCTCTTATGTACTCGTCTTCTTCAGCTTGTTATCCCTCTAGGAATCAATAA

Network for GWHGAAZE030505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	68	3.20E-07
PF13855.7	LRR_8	96	155	1.70E-07
PF13855.7	LRR_8	289	348	3.00E-07
PF13855.7	LRR_8	464	516	4.70E-07
PF07714.18	PK_Tyr_Ser-Thr	770	1041	6.10E-42

Protein Sequence

>GWHPAAZE030523
MPLNPWTLFFSSSFLIFSLSLLIPTLAINQQGESLLLWKQSLKGTLEPLNNWDPTDETPCGWFGISCNFNNEVEELNLRYMDLFGSVPSNFSLLLSLKQLTLSGTNLTGSIPKEVTALQGLESLDLSDNALSGEIPSEVFHLPKLEKLYINSNRLEGTIPAEIGNLTTLIELIIYDNQLSGIIPMTIGNLKKLEVIRAGGNKNLEGTLPNEIGNCTNLVMLGLAETSISGFLPSTLGLLKKLETIAIYTTLISGQIPPELGDCNALQNIYLYENSLSGSVPTRLGNLKNLQNLLLWQNNLVGTIPPELGSCKQLLVIDLSMNMLTGGIPATFGNLSSLQELQLSVNQLSGQIPTQIGGCWSITHIELDNNQITGTIPWEFGNLANLTLLYLWQNKLEGNIPPSISSCHSLEAIDFSQNSLIGSIPQGIFQLHKLNKLLLLSNNLSGSLPPEIGNCSSLIRFRANNNKLTGSIPQEMGHLKNLNFLDLGSNRLTGVIPTELSGCSNLTFLDLHSNSIAGNLPANLNHLVSLEFLDVSDNLIEGALNPSLGSLISLTKLIFGNNRFTGSIPTQISSCSKLQLLDLSSNDLSGNIPASLGKIPALEIALNLSWNQISGEIPEEFAALDKLGVLDLSHNQLSGDLQYLADLQNLVVLNVSHNNFTGHVPDTSFFAKLPLSVLAGNPGLCFSGNQCAAGKGGASRQGRMARVAMVVLLCAACALLLAALYIILGGKKSNRGDDACDVDAEMGPPWEVTLYQKLDVSLCDVGKCLTAGNILGQGRTGIVYRADTPSGLTIAVKRFRSSEKASESAFLSENATLARIRHRNIVRLLGWAANGKTKLLFYDYMPNGTLGGLLHEGCGGSVDWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEPCLADFGLARQVQNDNGSFSASPQFAGSYGYFAPEYACMLKITVKSDVYSYGVVLLEIITGKKPVDPSFPDSQHVIQWVRDHLKSKMDPVDIIDVKLQGYQDSQVQEMLQALGIALLCTSNRAEDRPTMKDVVALLREIRQEAAVGSETQKPTRKPSTEVMQYSSSSVTSAQLLLHGTTNCSLMYSSSSACYPSRNQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.398
	SRR3591706	second leaf	1.942
	SRR3591707	mature leaf	2.560
	SRR3591708	Shoot apex	4.112
	SRR3591709	Stem	3.171
	SRR3591710	White floral bud	2.937
	SRR3591711	White flower	2.741
	SRR3591712	Green floral bud	4.559
	SRR3591713	Yellow flower	0.566
SRP173429	SRR8316895	Juvenile bud stage	11.941
	SRR8316896	Juvenile bud stage	12.877
	SRR8316897	Juvenile bud stage	9.543
	SRR8316894	Third green stage	2.034
	SRR8316900	Third green stage	4.699
	SRR8316901	Third green stage	7.695
	SRR8316898	Complete white stage	0.426
	SRR8316899	Complete white stage	8.123
	SRR8316903	Complete white stage	0.726
	SRR8316902	Silver flowering stage	0.215
	SRR8316904	Silver flowering stage	0.462
	SRR8316905	Silver flowering stage	0.102
	SRR8316906	Gold flowering stage	0.292
	SRR8316907	Gold flowering stage	0.490
	SRR8316908	Gold flowering stage	0.088
SRP132670	SRR6706286	Control	1.825
	SRR6706287	Light intensity 50%	1.702
	SRR6706288	Light intensity 20%	1.880
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.425
	CNS0095593	Slightly white alabastrum(diploid) 2	3.851
	CNS0095594	Slightly white alabastrum(diploid) 3	2.741
	CNS0095595	Whole white alabastrum(diploid) 2	2.597
	CNS0095596	Whole white alabastrum(diploid) 3	1.451
	CNS0095597	Whole white alabastrum(diploid) 4	1.616
	CNS0095598	Silvery flower (diploied) 1	2.908
	CNS0095599	Silvery flower (diploied) 2	8.480
	CNS0095600	Silvery flower (diploied) 3	5.279
	CNS0095601	Golden flower (diploid) 1	6.476
	CNS0095602	Golden flower (diploid) 2	7.611
	CNS0095603	Golden flower (diploid) 3	6.997
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.447
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.989
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.454
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.889
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.524
	CNS0095610	Silvery flower (tetraploid) 1	0.487
	CNS0095611	Silvery flower (tetraploid) 2	2.006
	CNS0095612	Silvery flower (tetraploid) 3	1.533
	CNS0095613	Golden flower (tetraploid) 1	0.251
	CNS0095614	Golden flower (tetraploid) 2	1.060
	CNS0095615	Golden flower (tetraploid) 3	0.096
CRA001975	CRR073297	Stem 1	3.511
	CRR073298	Stem 2	4.538
	CRR073299	Stem 3	2.718
	CRR073300	Leaf 1	8.279
	CRR073301	Leaf 2	12.915
	CRR073302	Leaf 3	6.268
	CRR073303	Juvenile bud 1	6.360
	CRR073304	Juvenile bud 2	6.210
	CRR073305	Juvenile bud 3	13.153
	CRR073306	Third green 1	1.289
	CRR073307	Third green 2	1.446
	CRR073308	Third green 3	0.752
	CRR073309	Second white 1	1.101
	CRR073310	Second white 2	1.741
	CRR073311	Second white 3	1.220
	CRR073312	Silver flowering 1	1.841
	CRR073313	Silver flowering 2	2.520
	CRR073314	Silver flowering 3	1.402
	CRR073315	Gold flowering 1	2.276
	CRR073316	Gold flowering 2	3.292
	CRR073317	Gold flowering 3	1.165
	CRR073318	Tawny withering 1	1.499
	CRR073319	Tawny withering 2	2.667
	CRR073320	Tawny withering 3	2.064