Gene detail

Detail information of GWHGAAZE030519

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282390.1	1.0204E-175	PREDICTED: BOI-related E3 ubiquitin-protein ligase 1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	3E-26	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|D7SHQ4\|D7SHQ4_VITVI	4E-176	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15014.3}
TAIR10	AT1G10650.1	1E-91	SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44691626	44695835	+
GWHAAZE00000009	mRNA	44691626	44695835	+
GWHAAZE00000009	exon	44691626	44691734	+
GWHAAZE00000009	exon	44693270	44693631	+
GWHAAZE00000009	exon	44695311	44695835	+
GWHAAZE00000009	CDS	44691626	44691734	+
GWHAAZE00000009	CDS	44693270	44693631	+
GWHAAZE00000009	CDS	44695311	44695835	+

Transcript Sequence
>GWHTAAZE030553 ATGTTTGGAGGAGTTAATAACGGGAATCCTGCATTTCCTGCTTTCATGGAGGAAAATCGTTTCCAGTATGATATGAGTTCATTGCCTCAGCTGCAGTTATTTGGAGATTTTCCAGTTGGGTGTAATGTCGGTCCCATAAACTACATGGCCAATGAGCATGCCACTGCTACAAGTCGCCCTATTAAAAGAGCTCGGGAACCTGAACCTGTTTGCAGACAGCAGAAGCTTCACATTTCATTGAATAGTAACTTCTGTCCTGATGAAGCTGGTCAGAATGGAAGCATTCTGAACCAGAATCCTGTATCTACTGGGCTTAAGCTTTCATACGAGGAAGACGAACGCAACTCTTCTATTACCTCCGCCAGTGAAAACATGAAAGCTGCACTCCCTGCAACCTTTTCTCTCAGCAATAGTTTTAAAACTGAGATCGATCGGCAGAAAGAAGAATTTGATCAATATATCAGACTTCAGGAAAAAAACGTCATGAAGGGTGTAAGGGAGTTGACTCAGAGACACACAGCATCTTTCTTAAATGCTCTAGAACAAGGGGTAGCTAAGAAGTTACAAGAGAAAGCAATTGAAATAGAGAACATGAACCGAAAGAACAAGGAATTGGGCGAGAAAATAAAGCAGGTTGCAATGGAAGCTCAGTCGTGGCACTACAGGGCCAAATACAACGAATCAGTAGTCAACGTCCTCAAGACCAATCTGCAGCAGGTCATTGCTGAAGGGGCTGCACAAGCGAGGGAAGGCTGTGGGGACAGCGAGGTTGACGATGCAGCCTCTTACGCTAACCATCAGGGCATAGCTGGCGGTTCTGGAAATCCAGGTCCTACAAAGATGTTGACCTGCAAAGCTTGTAAGGGTAAGGAAGTCTCTATTTTGTTATTGCCATGTAGGCACTTGTGTCTCTGTAAGGATTGCGATGGGTTTATCGACATTTGCCCCGTTTGCCAGGTAATGAAGACTGCAAGTGTACAAGTGTACATGACATGA

Network for GWHGAAZE030519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	282	320	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.818
	SRR3591706	second leaf	20.781
	SRR3591707	mature leaf	18.337
	SRR3591708	Shoot apex	29.077
	SRR3591709	Stem	95.970
	SRR3591710	White floral bud	39.261
	SRR3591711	White flower	50.420
	SRR3591712	Green floral bud	40.004
	SRR3591713	Yellow flower	50.517
SRP173429	SRR8316895	Juvenile bud stage	25.534
	SRR8316896	Juvenile bud stage	35.714
	SRR8316897	Juvenile bud stage	17.692
	SRR8316894	Third green stage	20.572
	SRR8316900	Third green stage	58.944
	SRR8316901	Third green stage	64.879
	SRR8316898	Complete white stage	32.515
	SRR8316899	Complete white stage	68.135
	SRR8316903	Complete white stage	35.647
	SRR8316902	Silver flowering stage	23.560
	SRR8316904	Silver flowering stage	27.650
	SRR8316905	Silver flowering stage	15.894
	SRR8316906	Gold flowering stage	45.970
	SRR8316907	Gold flowering stage	41.533
	SRR8316908	Gold flowering stage	52.495
SRP132670	SRR6706286	Control	40.190
	SRR6706287	Light intensity 50%	47.482
	SRR6706288	Light intensity 20%	48.856
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.772
	CNS0095593	Slightly white alabastrum(diploid) 2	66.821
	CNS0095594	Slightly white alabastrum(diploid) 3	60.013
	CNS0095595	Whole white alabastrum(diploid) 2	62.490
	CNS0095596	Whole white alabastrum(diploid) 3	49.100
	CNS0095597	Whole white alabastrum(diploid) 4	46.914
	CNS0095598	Silvery flower (diploied) 1	28.685
	CNS0095599	Silvery flower (diploied) 2	41.035
	CNS0095600	Silvery flower (diploied) 3	58.372
	CNS0095601	Golden flower (diploid) 1	32.194
	CNS0095602	Golden flower (diploid) 2	40.849
	CNS0095603	Golden flower (diploid) 3	41.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.191
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.335
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.590
	CNS0095610	Silvery flower (tetraploid) 1	45.215
	CNS0095611	Silvery flower (tetraploid) 2	49.356
	CNS0095612	Silvery flower (tetraploid) 3	32.606
	CNS0095613	Golden flower (tetraploid) 1	49.183
	CNS0095614	Golden flower (tetraploid) 2	49.631
	CNS0095615	Golden flower (tetraploid) 3	37.872
CRA001975	CRR073297	Stem 1	28.283
	CRR073298	Stem 2	27.441
	CRR073299	Stem 3	27.918
	CRR073300	Leaf 1	40.417
	CRR073301	Leaf 2	32.624
	CRR073302	Leaf 3	32.654
	CRR073303	Juvenile bud 1	35.020
	CRR073304	Juvenile bud 2	25.880
	CRR073305	Juvenile bud 3	27.364
	CRR073306	Third green 1	30.065
	CRR073307	Third green 2	37.802
	CRR073308	Third green 3	23.718
	CRR073309	Second white 1	19.483
	CRR073310	Second white 2	18.738
	CRR073311	Second white 3	24.050
	CRR073312	Silver flowering 1	44.155
	CRR073313	Silver flowering 2	47.872
	CRR073314	Silver flowering 3	34.711
	CRR073315	Gold flowering 1	7.215
	CRR073316	Gold flowering 2	11.275
	CRR073317	Gold flowering 3	7.051
	CRR073318	Tawny withering 1	52.633
	CRR073319	Tawny withering 2	58.363
	CRR073320	Tawny withering 3	49.878