Gene detail

Detail information of GWHGAAZE030522

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011028552.1	PREDICTED: probable boron transporter 2 [Populus euphratica]
Swissprot	tr\|Q9M1P7\|BOR2_ARATH	Probable boron transporter 2
trEMBL	tr\|B9IES6\|B9IES6_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEF05729.2}
TAIR10	AT3G62270.1	HCO3- transporter family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44732745	44737225	-
GWHAAZE00000009	mRNA	44732745	44737225	-
GWHAAZE00000009	exon	44732745	44733053	-
GWHAAZE00000009	exon	44733568	44733838	-
GWHAAZE00000009	exon	44734390	44734709	-
GWHAAZE00000009	exon	44734795	44734932	-
GWHAAZE00000009	exon	44735151	44735246	-
GWHAAZE00000009	exon	44735360	44735533	-
GWHAAZE00000009	exon	44735653	44735819	-
GWHAAZE00000009	exon	44735987	44736152	-
GWHAAZE00000009	exon	44736324	44736462	-
GWHAAZE00000009	exon	44736546	44736738	-
GWHAAZE00000009	exon	44736837	44736919	-
GWHAAZE00000009	exon	44737122	44737225	-
GWHAAZE00000009	CDS	44737122	44737225	-
GWHAAZE00000009	CDS	44736837	44736919	-
GWHAAZE00000009	CDS	44736546	44736738	-
GWHAAZE00000009	CDS	44736324	44736462	-
GWHAAZE00000009	CDS	44735987	44736152	-
GWHAAZE00000009	CDS	44735653	44735819	-
GWHAAZE00000009	CDS	44735360	44735533	-
GWHAAZE00000009	CDS	44735151	44735246	-
GWHAAZE00000009	CDS	44734795	44734932	-
GWHAAZE00000009	CDS	44734390	44734709	-
GWHAAZE00000009	CDS	44733568	44733838	-
GWHAAZE00000009	CDS	44732745	44733053	-

Transcript Sequence
>GWHTAAZE030556 ATGGAAGAAACATTCGTTCCCTTCCGTGGAATCAAGAATGATCTCAAAGGAAGACTGTTGTGCTACAAGCAAGATTGGACCAGTGGCCTCCGTGCGGGTATCAGGATTCTGGCTCCAACAACATATATATTCTTTGCTTCAGCAATTCCCGTAATATCTTTTGGAGAACAACTAGAAAGAGAAACTGATGGAACTTTAACCGCAGTGCAAACTTTAGCATCAACAGCACTATGTGGCATTATCCATTCTATTGTTGGTGGACAGCCGTTGCTAATACTAGGTGTAGCGGAGCCAACAGTGTTGATGTACACGTTTATGTTCAACTTTGCAAAGGATCGGAAGGATTTGGGGCCAAAACTCTTCTTAGCCTGGACAGGATGGGTATGTGTGTGGACGGCTCTTTTGCTTTTCCTGCTGGCCGTTTTGGGTGCATGCTCTATCATCAATAGGTTTACACGTGTGGCTGGTGAATTATTTGGTCTTCTAATTGCGATGCTCTTTATGCAGCAGGCTATTCGAGGGGTTGTGGAGGAGTTTCGTATACCTGAGAGGGAAAATCTTGACCAGCCTGCACTTCAACCTTCTTGGCGCTTTGGAAATGGAATGTTTGCATTGGTTTTATCCTTTGGCCTTCTTCTAACTGCACTGAGGAGCCGCAAGGCTAGATCTTGGCGCTACGGGTCAGGTTGGTTAAGAGGACTTATTGCGGATTACGGTGTTCCACTTATGGTGCTGGTATGGACAGCTGTGTCTTATATACCCGTTAATAATGTCCCGAGAGGAATACCAAGGCGGCTTTTCAGTCCAAATCCGTGGTCCCCAAATGCTTACTCAAATTGGACAGTTATCAAGGAACTGGTGAATGTGCCTCCATTGTATATTGTTGGAGCGTTTATTCCGGCAACAATGATTGCAGTGCTTTACTACTTTGATCACAGCGTGGCATCTCAGCTTGCACAACAGAAGGAATTCAACCTGAAGAAACCTGCTTCATATCATTATGACCTGCTGCTTTTGGGCTTTTTGGTCATAGTATGTGGTCTTCTTGGAATTCCTCCTTCTAATGGAGTTATTCCACAATCTCCAATGCATACCAAAAGCTTAGCCACTCTAAAACATCAGCTTTTACGGAATAAGCTCGTCTCTACAGCTCGAAAAAGTATGGATAAGAATTCGAACCTGGGCCAGTTATACCAGAACATGCAAGAAGCATACAATGAGATGCAGACTCCACTTGTCTATCAAATCCCACCTGCTTTGGGACTGAAAGAGCTGAAGGAGTCAACGATCCAACTGGCTTCAAGTACTGGCTACATTGATGCCCCAGTTGACAAGACCGTTTTTGATGTGGATAAGGACATTGATGATCTTTTGCCCGTTGAAGTACAAGAACAACGCCTCAGTAATCTTCTTCAGTCATTGATGGTTGTTGGCTGTGTTGCCGCAATGCCCCTTTTAAAGAAGATCCCAACTTCGGTTCTTTGGGGTTACTTTGCTTTCATGGCCATCGAAAGCTTGCCTGGGAATCAATTCTGGGAGAGGATATTGTTGCTTTTCACTGCTCCAAGTCGAAGATACAAGGTTTTGGAGGATTATCATGCAAGCTTTGTGGAGACAGTACCTTTCAAAACGATTGCAGCCTTCACCTTGTTTCAGACAGTCTACTTGCTATTGTGTTTTGGGATAACGTGGATCCCAATTGCTGGTGTTCTTTTCCCACTGTTGATTATGCTTCTTGTCCCAGTAAGGCAGTATTTGCTCCCCAAGTTTTTCAAAGGGGCCCACCTTCAAGACTTAGATGCTGCGGAATATGAAGAAGCCCCTGCCATAGCATTCAACATGTCCTTCGGAGAACAAGAAAATGCAAGAACCACCCAATTTGATAGTGCTGAAATTCTTGATGAAATGGTCACAAGAAGCCGTGGGGAGGTTCGCCGTTCCCATAGTCCCAAAGTAACAAGTTCAACCCCAACTTCATTAGAGGATTTAAAGCCTTTGTATAGCCCACGGGTATCGCAGAGGGCATATAGTCCACGTCTAAATGAGCTAAGGGTCGAAAGGAGCCCTAGAAGGACCGGAAAAGGACTCGAAATAAAGCAAACTCCCAGTCCCAGGCCATCAATCCTCGGTCAAAGCAGTAACAGTTTCTCTTCAAGCTAA

Network for GWHGAAZE030522

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0087

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00955.22	HCO3_cotransp	2	180	1.00E-36
PF00955.22	HCO3_cotransp	202	373	5.20E-26
PF00955.22	HCO3_cotransp	460	550	6.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006820	biological_process	anion transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.926
	SRR3591706	second leaf	16.675
	SRR3591707	mature leaf	7.616
	SRR3591708	Shoot apex	43.049
	SRR3591709	Stem	60.562
	SRR3591710	White floral bud	600.512
	SRR3591711	White flower	466.837
	SRR3591712	Green floral bud	84.588
	SRR3591713	Yellow flower	258.283
SRP173429	SRR8316895	Juvenile bud stage	28.159
	SRR8316896	Juvenile bud stage	31.670
	SRR8316897	Juvenile bud stage	12.119
	SRR8316894	Third green stage	20.502
	SRR8316900	Third green stage	54.869
	SRR8316901	Third green stage	48.273
	SRR8316898	Complete white stage	125.081
	SRR8316899	Complete white stage	80.209
	SRR8316903	Complete white stage	231.513
	SRR8316902	Silver flowering stage	63.580
	SRR8316904	Silver flowering stage	142.023
	SRR8316905	Silver flowering stage	58.778
	SRR8316906	Gold flowering stage	93.875
	SRR8316907	Gold flowering stage	108.031
	SRR8316908	Gold flowering stage	157.610
SRP132670	SRR6706286	Control	42.376
	SRR6706287	Light intensity 50%	56.920
	SRR6706288	Light intensity 20%	50.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.578
	CNS0095593	Slightly white alabastrum(diploid) 2	29.281
	CNS0095594	Slightly white alabastrum(diploid) 3	24.976
	CNS0095595	Whole white alabastrum(diploid) 2	28.175
	CNS0095596	Whole white alabastrum(diploid) 3	21.897
	CNS0095597	Whole white alabastrum(diploid) 4	31.248
	CNS0095598	Silvery flower (diploied) 1	85.243
	CNS0095599	Silvery flower (diploied) 2	53.816
	CNS0095600	Silvery flower (diploied) 3	201.854
	CNS0095601	Golden flower (diploid) 1	36.132
	CNS0095602	Golden flower (diploid) 2	64.305
	CNS0095603	Golden flower (diploid) 3	62.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.920
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.290
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.322
	CNS0095610	Silvery flower (tetraploid) 1	196.488
	CNS0095611	Silvery flower (tetraploid) 2	222.681
	CNS0095612	Silvery flower (tetraploid) 3	259.689
	CNS0095613	Golden flower (tetraploid) 1	99.187
	CNS0095614	Golden flower (tetraploid) 2	122.245
	CNS0095615	Golden flower (tetraploid) 3	168.896
CRA001975	CRR073297	Stem 1	46.406
	CRR073298	Stem 2	45.473
	CRR073299	Stem 3	33.583
	CRR073300	Leaf 1	63.817
	CRR073301	Leaf 2	62.830
	CRR073302	Leaf 3	48.059
	CRR073303	Juvenile bud 1	59.960
	CRR073304	Juvenile bud 2	70.041
	CRR073305	Juvenile bud 3	104.410
	CRR073306	Third green 1	173.836
	CRR073307	Third green 2	246.678
	CRR073308	Third green 3	223.399
	CRR073309	Second white 1	45.224
	CRR073310	Second white 2	44.025
	CRR073311	Second white 3	30.409
	CRR073312	Silver flowering 1	16.001
	CRR073313	Silver flowering 2	13.369
	CRR073314	Silver flowering 3	17.752
	CRR073315	Gold flowering 1	14.316
	CRR073316	Gold flowering 2	20.981
	CRR073317	Gold flowering 3	9.157
	CRR073318	Tawny withering 1	45.004
	CRR073319	Tawny withering 2	29.504
	CRR073320	Tawny withering 3	46.103