Gene detail

Detail information of GWHGAAZE030527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663178.1	0	PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	3E-169	Serine/threonine-protein kinase ATM
trEMBL	tr\|V4VK09\|V4VK09_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR53064.1}
TAIR10	AT3G48190.1	4E-142	ataxia-telangiectasia mutated

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44846284	44868286	+
GWHAAZE00000009	mRNA	44846284	44868286	+
GWHAAZE00000009	exon	44846284	44846439	+
GWHAAZE00000009	exon	44848861	44848932	+
GWHAAZE00000009	exon	44857646	44857715	+
GWHAAZE00000009	exon	44858229	44858346	+
GWHAAZE00000009	exon	44858461	44858584	+
GWHAAZE00000009	exon	44860382	44860525	+
GWHAAZE00000009	exon	44864935	44865042	+
GWHAAZE00000009	exon	44865361	44865408	+
GWHAAZE00000009	exon	44865530	44865634	+
GWHAAZE00000009	exon	44866134	44866220	+
GWHAAZE00000009	exon	44867742	44868059	+
GWHAAZE00000009	exon	44868167	44868286	+
GWHAAZE00000009	five_prime_UTR	44846284	44846316	+
GWHAAZE00000009	CDS	44846317	44846439	+
GWHAAZE00000009	CDS	44848861	44848932	+
GWHAAZE00000009	CDS	44857646	44857715	+
GWHAAZE00000009	CDS	44858229	44858346	+
GWHAAZE00000009	CDS	44858461	44858584	+
GWHAAZE00000009	CDS	44860382	44860525	+
GWHAAZE00000009	CDS	44864935	44865042	+
GWHAAZE00000009	CDS	44865361	44865408	+
GWHAAZE00000009	CDS	44865530	44865634	+
GWHAAZE00000009	CDS	44866134	44866220	+
GWHAAZE00000009	CDS	44867742	44868059	+
GWHAAZE00000009	CDS	44868167	44868286	+

Transcript Sequence
>GWHTAAZE030561 TCCAGACCTCTTAATTCTGACAGTGCTTCAGAGATGAGCTTTCAAATGGGAACAGGCATATCTGATGAACTTCTGGTTGCAGTTATGAGGCTTCTGAAGAAGTATCTGATGGATGATTCTGTTCAGATAATTGATTTGACTTCACATGTGCTACGGGGGATACTTTCAACTGAAAGGGGCCAACAAGCTTTAGCATCATTCGATTCTTATGAGAGGTGTCTTATTGAGGTTCACTGCAAAGGTGTTAATTTAGAGCTTGTGCAGAATTCCCTGCTGGATCTAGAAAGAAAGTTTAATGCTAAATCAATTTCAGTGGAGATGTCTGGTTTATGGGAGACTCGTGACAAAACTTTTGAGACATGGATCTGTCCACTTGTTTATGCGCTCATTGGTTATTGTGATGATATTGTTCTGAGATTGTGCCAAGATATTGTGTTTCTGAAAGCTGAAGTTGCAGAGCTTCTACTGCCAAATGTTTTTGTCAATCTGGCAGGCAGGAAGGATTTGGATTTTGACATCTGCAAATTGATTTCTTTTAAGGTACAGGAGAATATATTTAGCGAGCCCAATAAGTTGATCAAATCAATTCAGATTATTTTGGAAGCACTTAATGAGCTTCGACTATGTCATGTAATGGAAAGAACTGCATCGTCTTCAATGTCATCTAAGAGAGAAAGTTCAAAGTTTGCTAGGCCTTCTAGTTATAACTCAAGATCCCGTTCTACATCAAAGCTGAAGGATTTCAGTTCTACATCAGCTGAATTATTGACATCCACATCGTCATGGGAGAAGGTTTATTGGCTTCCTATTGATTATCTTATTGTTTCCAAATCTGCCATTCATTGTGGCTCCTACTTTACTGCTGTTCTATATGTGGAACACTGGTCTGAAGAGCATTTTAGCAGCCTCACTTTGGGGAGTCCAGATTTTTCCCATCTTGAAACACTACCACACCACATTGAAATATTAGTCTCAGCGGTCACCCAAATAAATGAACCAGACAGTCTGTATGGGATCATCCAGTCACACAAGTTGACATCACAAATCATCACCTTTGAACATGAGGGAAACTGGAGTAAAGCTCTCGAGTATTATGACTTGCAAGTGAGGTCTGAACCAGAATTCCATATCGGCGGTTGTTCCAGAAAATCTCCACCTGAGAATTCTCAACCAGCAGATCAATTATCTCTGTTTAAGTCTGAAGATGGAATGAGGCAAAGGAAACCTTACAAAGGGCTAATCAGATCTTTACAGCAAATTGGGTGCACTCATGTGTTGGATTTGTATTGCCAAGGATTGACGTCTCGGAAAGGCCGTTTTCAGCATGATTTAGAATTCAATGAGCTGCAGTATGAAGCTGCTTGGCGTGCGGGAAACTGGGATTTCTCTTTACTCTATGGGGAAGCTAATTCTCCTACTTCAGTTCAATACATTAAAAGTTATCATTTCAATGAAAATTTGCACAGGTAA

Network for GWHGAAZE030527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04728	ATM, TEL1	Homologous recombination	map03440
		NF-kappa B signaling pathway	map04064
		FoxO signaling pathway	map04068
		Cell cycle	map04110
		Apoptosis	map04210
		Apoptosis - fly	map04214
		p53 signaling pathway	map04115
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.887
	SRR3591706	second leaf	3.993
	SRR3591707	mature leaf	3.020
	SRR3591708	Shoot apex	5.868
	SRR3591709	Stem	6.619
	SRR3591710	White floral bud	2.952
	SRR3591711	White flower	2.429
	SRR3591712	Green floral bud	5.106
	SRR3591713	Yellow flower	1.155
SRP173429	SRR8316895	Juvenile bud stage	2.950
	SRR8316896	Juvenile bud stage	3.616
	SRR8316897	Juvenile bud stage	2.602
	SRR8316894	Third green stage	2.167
	SRR8316900	Third green stage	4.818
	SRR8316901	Third green stage	4.048
	SRR8316898	Complete white stage	0.293
	SRR8316899	Complete white stage	1.226
	SRR8316903	Complete white stage	0.709
	SRR8316902	Silver flowering stage	0.097
	SRR8316904	Silver flowering stage	0.223
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.010
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	0.412
SRP132670	SRR6706286	Control	1.527
	SRR6706287	Light intensity 50%	1.649
	SRR6706288	Light intensity 20%	2.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.347
	CNS0095593	Slightly white alabastrum(diploid) 2	0.978
	CNS0095594	Slightly white alabastrum(diploid) 3	0.874
	CNS0095595	Whole white alabastrum(diploid) 2	1.203
	CNS0095596	Whole white alabastrum(diploid) 3	0.394
	CNS0095597	Whole white alabastrum(diploid) 4	0.666
	CNS0095598	Silvery flower (diploied) 1	0.989
	CNS0095599	Silvery flower (diploied) 2	1.976
	CNS0095600	Silvery flower (diploied) 3	0.952
	CNS0095601	Golden flower (diploid) 1	1.041
	CNS0095602	Golden flower (diploid) 2	0.910
	CNS0095603	Golden flower (diploid) 3	1.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.510
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.700
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.255
	CNS0095610	Silvery flower (tetraploid) 1	5.757
	CNS0095611	Silvery flower (tetraploid) 2	5.871
	CNS0095612	Silvery flower (tetraploid) 3	3.609
	CNS0095613	Golden flower (tetraploid) 1	2.973
	CNS0095614	Golden flower (tetraploid) 2	4.624
	CNS0095615	Golden flower (tetraploid) 3	6.275
CRA001975	CRR073297	Stem 1	2.746
	CRR073298	Stem 2	2.254
	CRR073299	Stem 3	0.402
	CRR073300	Leaf 1	2.653
	CRR073301	Leaf 2	1.472
	CRR073302	Leaf 3	0.972
	CRR073303	Juvenile bud 1	0.532
	CRR073304	Juvenile bud 2	0.162
	CRR073305	Juvenile bud 3	1.383
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.554
	CRR073316	Gold flowering 2	0.756
	CRR073317	Gold flowering 3	0.112
	CRR073318	Tawny withering 1	0.399
	CRR073319	Tawny withering 2	0.582
	CRR073320	Tawny withering 3	0.306