Gene detail

Detail information of GWHGAAZE030529

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663179.1	PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	Serine/threonine-protein kinase ATM
trEMBL	tr\|F6GSQ6\|F6GSQ6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42979.1}
TAIR10	AT3G48190.1	ataxia-telangiectasia mutated

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44876961	44886084	+
GWHAAZE00000009	mRNA	44876961	44886084	+
GWHAAZE00000009	exon	44876961	44877112	+
GWHAAZE00000009	exon	44877214	44877415	+
GWHAAZE00000009	exon	44877523	44877627	+
GWHAAZE00000009	exon	44878478	44878561	+
GWHAAZE00000009	exon	44878929	44879009	+
GWHAAZE00000009	exon	44879139	44879228	+
GWHAAZE00000009	exon	44879338	44879400	+
GWHAAZE00000009	exon	44879541	44879681	+
GWHAAZE00000009	exon	44879803	44879859	+
GWHAAZE00000009	exon	44880037	44880096	+
GWHAAZE00000009	exon	44881094	44881188	+
GWHAAZE00000009	exon	44881290	44881398	+
GWHAAZE00000009	exon	44881538	44881627	+
GWHAAZE00000009	exon	44882787	44882866	+
GWHAAZE00000009	exon	44882948	44883026	+
GWHAAZE00000009	exon	44883371	44883417	+
GWHAAZE00000009	exon	44883506	44883605	+
GWHAAZE00000009	exon	44883818	44883949	+
GWHAAZE00000009	exon	44884053	44884187	+
GWHAAZE00000009	exon	44884480	44884545	+
GWHAAZE00000009	exon	44885185	44885328	+
GWHAAZE00000009	exon	44885572	44886084	+
GWHAAZE00000009	CDS	44876961	44877112	+
GWHAAZE00000009	CDS	44877214	44877415	+
GWHAAZE00000009	CDS	44877523	44877627	+
GWHAAZE00000009	CDS	44878478	44878561	+
GWHAAZE00000009	CDS	44878929	44879009	+
GWHAAZE00000009	CDS	44879139	44879228	+
GWHAAZE00000009	CDS	44879338	44879400	+
GWHAAZE00000009	CDS	44879541	44879681	+
GWHAAZE00000009	CDS	44879803	44879859	+
GWHAAZE00000009	CDS	44880037	44880096	+
GWHAAZE00000009	CDS	44881094	44881188	+
GWHAAZE00000009	CDS	44881290	44881398	+
GWHAAZE00000009	CDS	44881538	44881627	+
GWHAAZE00000009	CDS	44882787	44882866	+
GWHAAZE00000009	CDS	44882948	44883026	+
GWHAAZE00000009	CDS	44883371	44883417	+
GWHAAZE00000009	CDS	44883506	44883605	+
GWHAAZE00000009	CDS	44883818	44883949	+
GWHAAZE00000009	CDS	44884053	44884187	+
GWHAAZE00000009	CDS	44884480	44884545	+
GWHAAZE00000009	CDS	44885185	44885328	+
GWHAAZE00000009	CDS	44885572	44885649	+
GWHAAZE00000009	three_prime_UTR	44885650	44886084	+

Transcript Sequence
>GWHTAAZE030563 GTTGAAGAAGCTAAGCTTCTGCGTGCCCAAGGTCAGCATGAGATGGCAATAAACCTTGCAAAGTATATTTCACAAAATTATCAGTTGGGTGAAGACGCATCAGATGTCTATCGCCTAGTTGGGAAGTGGCTAGCAGAAACTCGATCTAGCAACTCGAGGACCATTTTAGAGAAGTACCTAAAACATGCAGTTACTCTTGCTGAGGATCACAAGGCCATAGACTTGAAGTCCATAGCAAGACAAAGCCAAACACATTTCCATCTTGCTCACTACGCAGATGCTCTGTTTCGGAGTTTTGAAGAAAGGCTTAACTCTAATGAGTGGCAAGCGGCAATGCGGCTAAGGAAACACAAGAGTAAAGAGCTCGAGGCACTGATAAGGCAACTGAAGAGTTCTTCAAAGGCAAGTCCCAGTAATTGTCTGTTTTACTTTTTGGTCATTAACCTGTCACTGCTTTGGCAAGACAGGGACAATTTCCTCAGCATCGCATTGGAAGGTTATAAGCACTGTTTGGTCATAGGTGATAAATATGATGTGAGAGTGGTATTTCGACTTGTTTCCCTGTGGTTTCGTCTCTCTACCAGACAAATTGTTGTAAACAACATGCTTATTACAATCAAAGAGGTTCAGTCTTACAAGTTTATTCCACTAGTCTACCAAATTGCTTCAAGAATGGGCAGCTCAAAAGATGGGCAGGGACCTCATAGTTTCCAGTTTGCTTTAATTTCTCTTGTGAAGAAAATGGCCATTGACCATCCGTACCATACAATATTTCAGCTTTTAGCTTTGGCAAATGGTGACCGGGTCAAGGACAAGCAGCGTAGTCGAAACTCATTTGTGGTCGATATGGATAAAAAGTATGCTGCAGAAAACCTCTTAGAAGAGTTAACTTCATACCATGGAGCTGTTCTCAGACAAATGAAACAAATCGTGGAGATTTATATTAAACTCGCTGAACTAGAAGTAAAGAGAGAGGATATGAATAAAAAGGTTACTCTACCAAGAGAAATCCGCAATGTTCGACAACTTGAACTGGTACCTGTAGTGACTGCAACTTTCCCTGTTGACCGTAGCTGTAAATATCATGAAGGCTCATTCCCACACTTTAAAGGATTAGGGGATTCAATCACGGTAATGAATGGTGTAAATGCTCCGAAAGTGGTCGAATGCCTAGGTTCTGATGGTAGCAGATATCGGCAGCTAGCAAAGTCTGGAAATGATGACCTCAGACAAGATGCTGTGATGGAACAGTTTTTTGCTTTAGTTAACACTTTTTTACAGAACCATCGAGATACATGGAAAAGGAGATTAGGAATACGGACGTACAAGGTAGTTCCTTTTACCCCAAGTGCGGGTGTTCTCGAATGGGTAAATGGCACTGTACCTTTAGGTGAATATCTAATAGGAAGTATGCGAAATGGAGGTGCACACGGACGCTATGGAGTAGGAGACTGGACATTTCTCAAGTGCCGGCAGCACATGGCTGCAGAAACCAAAAAGCGCAAGGCATTCCAGGAAGTTTGTCAGAACTTCAGGCCTGTCATGCATTACTTTTTCTTGGAGAGATTTTTACGTCCTGCTGACTGGTTTGAGAAGAGGCTCGCTTACACACGAAGTGTGGCAGCTAGTTCAATGGTAGGTTACATTGTTGGACTTGGAGATCGACATTCCATGAACATCCTAATTGATCAAGCCACTGCTGAAGTTGTTCACATTGATCTCGGTGTTGCCTTTGAGCAAGGCTTGATGCTTAAAACGCCCGAGCGGGTTCCATTCAGGCTGACAAGGGACATCATTGACGGTATGGGAGTAACCGGTGTGGAAGGGGTTTTCAGAAGATGTTGTGAGGAAACTCTCTCCGTTATGCGGACTAATAAAGAAGCCCTGCTAACCATCATTGAAGTTTTTATCCACGATCCTTTATATAAGTGGGCTTTGTCACCTCTGAAGGCTTTGCAACGTCAAAAGGAAATTGATGATGATCTGGAGACAAATTTGGAAGATTCACAGGATGAGTATGAAGGAAACAAGGATGCTGCACGTGCCCTTTTGCGTGTTAAGCAAAAGCTAGATGGATATGAAGAAGGTGAAATGAGAAGTGTGCATGGGCAGGTTCAACAACTCATACAAGATGCCATTGATCCTGATCGACTGTGTCAAATGTTTCCTGGATGGGGAGCTTGGTTGTGATTTTGATAAAAATTCAAATCATTGTAGCAGGAAATTTTAATTGGTTGTATTCAGAAAATCAACTGGATTATACTTTATGATTCACTAAAATTGCGAACGGCAATCATAATGCGGTCAATCGAGATGTGAAGGACTTTTGTAGGTCTTCATTCTGCTTGCAACTTGCGAAATATGTCGCGGAGGGAAGTATGATCTTGTTTATATTATGTTGTCGAAGTTGTCCGGAGGCTTTAGAAAAAGCGATTTTGTAATACAAGTTTGGAGCTAAGAGAAATGGTAGGATTTTTGAAGATCCAGAGGAGGGTAAAGTGGTCTTGGTACTAACCTCAGGATTTGGCTTCAAATTTTTGGTTTAGCTCGTTTGCAGTAACTGGGGATGATAGCAGAGGGCTGAGGACCACTTAGTTTGCTGGTTCACCAGGAGGTTAATGAATT

Network for GWHGAAZE030529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00454.28	PI3_PI4_kinase	405	645	3.80E-49
PF02260.21	FATC	700	729	2.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04728	ATM, TEL1	Homologous recombination	map03440
		NF-kappa B signaling pathway	map04064
		FoxO signaling pathway	map04068
		Cell cycle	map04110
		Apoptosis	map04210
		Apoptosis - fly	map04214
		p53 signaling pathway	map04115
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0016301	molecular_function	kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.417
	SRR3591706	second leaf	8.811
	SRR3591707	mature leaf	5.122
	SRR3591708	Shoot apex	13.936
	SRR3591709	Stem	13.543
	SRR3591710	White floral bud	3.302
	SRR3591711	White flower	3.045
	SRR3591712	Green floral bud	8.569
	SRR3591713	Yellow flower	1.486
SRP173429	SRR8316895	Juvenile bud stage	5.610
	SRR8316896	Juvenile bud stage	8.248
	SRR8316897	Juvenile bud stage	4.250
	SRR8316894	Third green stage	3.667
	SRR8316900	Third green stage	7.526
	SRR8316901	Third green stage	6.537
	SRR8316898	Complete white stage	0.497
	SRR8316899	Complete white stage	3.414
	SRR8316903	Complete white stage	1.361
	SRR8316902	Silver flowering stage	0.232
	SRR8316904	Silver flowering stage	0.301
	SRR8316905	Silver flowering stage	0.117
	SRR8316906	Gold flowering stage	0.440
	SRR8316907	Gold flowering stage	0.327
	SRR8316908	Gold flowering stage	0.304
SRP132670	SRR6706286	Control	5.427
	SRR6706287	Light intensity 50%	6.518
	SRR6706288	Light intensity 20%	7.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.611
	CNS0095593	Slightly white alabastrum(diploid) 2	5.100
	CNS0095594	Slightly white alabastrum(diploid) 3	4.602
	CNS0095595	Whole white alabastrum(diploid) 2	2.818
	CNS0095596	Whole white alabastrum(diploid) 3	3.709
	CNS0095597	Whole white alabastrum(diploid) 4	3.194
	CNS0095598	Silvery flower (diploied) 1	2.959
	CNS0095599	Silvery flower (diploied) 2	3.244
	CNS0095600	Silvery flower (diploied) 3	1.226
	CNS0095601	Golden flower (diploid) 1	3.379
	CNS0095602	Golden flower (diploid) 2	1.278
	CNS0095603	Golden flower (diploid) 3	1.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.856
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.347
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.420
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.128
	CNS0095610	Silvery flower (tetraploid) 1	12.946
	CNS0095611	Silvery flower (tetraploid) 2	10.281
	CNS0095612	Silvery flower (tetraploid) 3	9.345
	CNS0095613	Golden flower (tetraploid) 1	11.424
	CNS0095614	Golden flower (tetraploid) 2	11.782
	CNS0095615	Golden flower (tetraploid) 3	12.868
CRA001975	CRR073297	Stem 1	9.464
	CRR073298	Stem 2	7.905
	CRR073299	Stem 3	3.016
	CRR073300	Leaf 1	8.896
	CRR073301	Leaf 2	7.939
	CRR073302	Leaf 3	3.037
	CRR073303	Juvenile bud 1	3.658
	CRR073304	Juvenile bud 2	1.652
	CRR073305	Juvenile bud 3	4.411
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.079
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.051
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.022
	CRR073315	Gold flowering 1	0.678
	CRR073316	Gold flowering 2	1.929
	CRR073317	Gold flowering 3	0.256
	CRR073318	Tawny withering 1	4.278
	CRR073319	Tawny withering 2	5.474
	CRR073320	Tawny withering 3	3.200