Detail information of GWHGAAZE030532


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFO64619.101-deoxy-d-xylulose 5-phosphate reductoisomerase [Centella asiatica]
COGYP_007098109.101-deoxy-D-xylulose 5-phosphate reductoisomerase
Swissprottr|Q8W250|DXR_ORYSJ01-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBLtr|K4K588|K4K588_EUCUL0Chloroplast 1-deoxy-D-xylulose-5-phosphate reductase {ECO:0000313|EMBL:AFU93071.1}
TAIR10AT5G62790.101-deoxy-D-xylulose 5-phosphate reductoisomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4490762744914291-
GWHAAZE00000009mRNA4490762744914291-
GWHAAZE00000009exon4491419844914291-
GWHAAZE00000009exon4491360344913790-
GWHAAZE00000009exon4491324944913335-
GWHAAZE00000009exon4491175244911877-
GWHAAZE00000009exon4491158544911647-
GWHAAZE00000009exon4491122144911370-
GWHAAZE00000009exon4491094144911131-
GWHAAZE00000009exon4491019444910305-
GWHAAZE00000009exon4490998744910091-
GWHAAZE00000009exon4490972744909848-
GWHAAZE00000009exon4490878144908927-
GWHAAZE00000009exon4490762744907798-
GWHAAZE00000009CDS4491419844914291-
GWHAAZE00000009CDS4491360344913790-
GWHAAZE00000009CDS4491324944913335-
GWHAAZE00000009CDS4491175244911877-
GWHAAZE00000009CDS4491158544911647-
GWHAAZE00000009CDS4491122144911370-
GWHAAZE00000009CDS4491094144911131-
GWHAAZE00000009CDS4491019444910305-
GWHAAZE00000009CDS4490998744910091-
GWHAAZE00000009CDS4490972744909848-
GWHAAZE00000009CDS4490878144908927-
GWHAAZE00000009CDS4490762744907798-
Transcript Sequence

Network for GWHGAAZE030532

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02670.17DXP_reductoisom822101.80E-47
PF08436.13DXP_redisom_C2753489.10E-32
PF13288.7DXPR_C3805016.90E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00099dxr Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0046872molecular_functionmetal ion binding
GO:0070402molecular_functionNADPH binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.417
SRR3591706second leaf124.181
SRR3591707mature leaf110.016
SRR3591708Shoot apex48.322
SRR3591709Stem32.571
SRR3591710White floral bud444.391
SRR3591711White flower295.075
SRR3591712Green floral bud135.448
SRR3591713Yellow flower431.346
SRP173429 SRR8316895Juvenile bud stage 34.857
SRR8316896Juvenile bud stage 50.862
SRR8316897Juvenile bud stage 22.258
SRR8316894Third green stage 33.887
SRR8316900Third green stage 210.142
SRR8316901Third green stage 190.252
SRR8316898Complete white stage 243.773
SRR8316899Complete white stage 364.288
SRR8316903Complete white stage 362.594
SRR8316902Silver flowering stage126.920
SRR8316904Silver flowering stage182.742
SRR8316905Silver flowering stage107.325
SRR8316906Gold flowering stage 296.305
SRR8316907Gold flowering stage 273.701
SRR8316908Gold flowering stage 267.731
SRP132670SRR6706286Control260.691
SRR6706287Light intensity 50%264.543
SRR6706288Light intensity 20%282.208
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.853
CNS0095593Slightly white alabastrum(diploid) 243.688
CNS0095594Slightly white alabastrum(diploid) 342.623
CNS0095595Whole white alabastrum(diploid) 297.364
CNS0095596Whole white alabastrum(diploid) 369.808
CNS0095597Whole white alabastrum(diploid) 493.537
CNS0095598Silvery flower (diploied) 1138.707
CNS0095599Silvery flower (diploied) 2149.228
CNS0095600Silvery flower (diploied) 3611.776
CNS0095601Golden flower (diploid) 1217.810
CNS0095602Golden flower (diploid) 2492.852
CNS0095603Golden flower (diploid) 3486.195
CNS0095604Slightly white alabastrum(tetraploid) 153.268
CNS0095605Slightly white alabastrum(tetraploid) 256.547
CNS0095606Slightly white alabastrum(tetraploid) 3107.789
CNS0095607Whole white alabastrum(tetraploid) 135.983
CNS0095608Whole white alabastrum(tetraploid) 253.930
CNS0095609Whole white alabastrum(tetraploid) 3128.435
CNS0095610Silvery flower (tetraploid) 1765.546
CNS0095611Silvery flower (tetraploid) 21325.541
CNS0095612Silvery flower (tetraploid) 31007.361
CNS0095613Golden flower (tetraploid) 1735.523
CNS0095614Golden flower (tetraploid) 2784.228
CNS0095615Golden flower (tetraploid) 31596.046
CRA001975CRR073297Stem 164.338
CRR073298Stem 258.777
CRR073299Stem 361.012
CRR073300Leaf 1163.166
CRR073301Leaf 2132.650
CRR073302Leaf 3168.638
CRR073303Juvenile bud 1263.424
CRR073304Juvenile bud 2304.743
CRR073305Juvenile bud 3257.466
CRR073306Third green 1259.902
CRR073307Third green 2158.083
CRR073308Third green 3168.993
CRR073309Second white 1457.673
CRR073310Second white 2274.887
CRR073311Second white 3314.847
CRR073312Silver flowering 1355.033
CRR073313Silver flowering 2327.576
CRR073314Silver flowering 3247.690
CRR073315Gold flowering 164.738
CRR073316Gold flowering 277.692
CRR073317Gold flowering 360.938
CRR073318Tawny withering 141.858
CRR073319Tawny withering 229.676
CRR073320Tawny withering 375.814