Gene detail

Detail information of GWHGAAZE030554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15072.3	0	unnamed protein product [Vitis vinifera]
trEMBL	tr\|M4F476\|M4F476_BRARP	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra035876.1-P}
TAIR10	AT3G48050.2	3E-147	BAH domain ;TFIIS helical bundle-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45231910	45238941	-
GWHAAZE00000009	mRNA	45231910	45238941	-
GWHAAZE00000009	exon	45231910	45234722	-
GWHAAZE00000009	exon	45235121	45236291	-
GWHAAZE00000009	exon	45236441	45236812	-
GWHAAZE00000009	exon	45238867	45238941	-
GWHAAZE00000009	CDS	45238867	45238941	-
GWHAAZE00000009	CDS	45236441	45236812	-
GWHAAZE00000009	CDS	45235121	45236291	-
GWHAAZE00000009	CDS	45231910	45234722	-

Transcript Sequence
>GWHTAAZE030588 ATGTGTTCAGTCCCCCCTCGTGGAGTGACTGTTGCCGGAGATACTGTAGCTTCTACCTCTGATTCCTTTTTCAAGGATGGTCGCAGAATTAGCATCGGTGACTGTGCTCTTTTCAAACCGTCTGAGAGCTATCTGCCTTTCATTGGAATAATCCGCTGGTTATCATTCAGTAAAAACAATAATCTACAGTTGGGTGTAAATTGGCTTTATCGACCAGCTGAAGTGAAACTTGGCAAAGGCATCCTGCCGGACGCCGAGCCAAACGAAATCTTCTATTCCTTCCATAAGGATGAGATACCTGCTGCATCCTTACTCCATCCGTGTAAAGTTGCATTCCTTCCCAAAGGTGTTGAGCTTTCTCCAGGGATATCCTCTTTTGTGTGCCGGCAAGTTTATGACATTGCAAACAAGTGTTTGTGGTGGTTAACCGATCAAGATTATATTGATGAGCAACAGCAGGAGGTAGATCAGCTTTTATACAAAACAAGAATAGAGATGCATACAGTGCAGCCTGGTGGCCGTTCACCAAAACCATTAAGTGTTAATACATCAACATCACAGTCAAAACCTACTTCCGATAATGTACAAAGTAGTGCGAATTCTTTCCCTTCCCAAGTGAAGCGAAAGAAAAGGGAGCAGAGAGATCTTGGATCTGAGCCTTCCAAACGAGAACGTTCCTCAAAATCAGATGACGGCGACTCCGGTCAGTTCAAAGCAGAAAGCGTGTTGAAATCTGAGATAGCTAAAATAACCGAAAAGGGAGGGCTTATGAATTCTGAAGGGGTTGAGAAACTAGTACAGCTCATGAAACCTGATAGGGAGGAGAGGAAGATGGATTTGGTTAGCCGGTCAATGCTAGCAGGGGTGATAGCTGCCACAGATAGGTTTGACTGCCTAAGTTGGTTTGTGCAGCTCAAGGGTTTGCCTGTATTGGATGAATGGCTCCAAGACATCCACAGGGGGAAAATTGGTGATGGTAGTAGTATCCCCCTTAAGAATGGTGATAAATCTGTTGAGGATTTTCTCTTGCTTTTACTCCGTGCACTTGATAAGCTCCCAGTGAATCTTCATGCTCTACAAATGTGTAATATTGGGAGATCAGTGAATCATCTGCGTACAAATAAAAATCTGGAAATTCAAAAGAAGGCCAGGAGCTTAGTTGACACTTGGAAGAAACGTGTTGAGGCCGAAATGAACAGTATTGATTCGAAGTCCGGTTCTTCTCAGCCTGTTTCTTGGTCTTCTAAGTCCCGTCTTCCAGAAGTTTCTCATGGTGGGAATAGACATCCTGGGGGCTCCTCTGAGATTGCTATGAAGAGCCCAGTCCAACATTTTTCTGCATCTAAAACTTCTTCTGCAATCAAGCCTGTGCGTGGAGAAACTACTACAAAGTCTGCATCCTCGTCTCCGAGGCCAATGAAAGCTGCACTATCACCTGGATCGGGTAAGGACGGGCACCCCAGAATTTCTGCTTACAGTGGTGGAGGTACTTTTGAAGATCGTTCCGTCGTGAATGGCAGGGCTGCTTCTCCTGTTCTTTTGGAGAAGCATGATCAATCTGTTAGTGATTCAAAAGAAGGTGAGGGTTATGCCATAAAATATTTGGAAAAGTGGGAAAGTGATGGGTCACCTGATGCTATTCATGATGAAGAACGGAGTAGGATGGCTGATGACACTAGGAAATCTAGGGAAGTCTCCAAAGCTGGTTCCTTGTCATCTGGAAATGAGCTGGAATCTGGGAAACTGGATGTGTTCAAACTAGCGGACGAGGCGTCTTTCAGCACTCTACGTTCTTTAATTGAAAGCTGTGTCAAGTACTCTGAAGCAAATGCATCTTTATCAGTCGGGGATGATGTTGGAATGGAACTGCTTGCTAGCGTGGCTGCTGGAGAAGTTTCTAACTCTGATCATGTGTCACCAACTAATTCTCCACAAAGAAATAAGCCTGAAATTGAGGATACTTGTGTTGCTAATGATGACAGCTCAAAAGTATCATCTACCGACATCCTTGCTTGCCAAAGTCAACCTGATAATTGTGTTGATCGTGATATTGAGCAGGGCAATTTTGCTGGCACTTCTAGGTCTAAGGGTGGACTAGATTCGTGTGAACCTGCATCTGAAGAACCATCAGCACGCAATTCTTGCAGTATGGATCTGCAAGCAACTGCAGATCCATTTATTGAGAACAATGAAAAGTCTGATAATATGAAAGTTGCTGCTAATGTGGCTGCCTCCCCTGGCAGCATGACAGAGAACCTAATGGATGTTAAAGTAGGCAACAGAGAGGAAAATGCCGTTATTAACGACACAAGTCTTGATGGCATTCCAGACGTTAATCTGAGGGGGGTCAATCCTTTACTGACCAAAGTCAATGATATCCGTGGAAGTGTAGAAGATGATAAGCGAGCTGTCGAAATTTCATCATCATCCCATTTATTAGAAAATGAGGGTGAGAACATTGTGGAAGAAGGGTTAGGTGGTGGTGGTAATGCAGAGCAGAAGCCAGCTACAGTGAGGATGAAACCTGAGCACATAGATGAAAAGGATGAAAAAATTCTGCAGTTTTCTAATTCTGTTAAAAAATTGGTTCCCGAAGAACCCAAAGTCAGAAAAGTTGAAGAGTTGGACATGAGTTCAGTTAATCAGGCTGAAAAACAATTTGGTCAAGAAACTGACAATGTTAAAGATATTGAAAATCAAGGGTGGGTTGGTTTAGGTTCAGCCATTACCAATCAGAAAAGTGATTGCAAGGATGAGAACATAAAGAGTGAAGAGGTTCTGGAGCAATCTAATAGTGGAATAATTCCTCATAAAGATTCACTTGCATCTCCTTCCCAAGGAACGGATCTGCATGGGAGGTTAAAGGGTTTGAAGTTACCTGCTGTTGAAGCAGCAGAAACAGAGGAATGCGCATCCACGACGGCAGATATATCTCTGTTCTCAGCTTCAGGACCACAACATATGGCTGCAAAAGTGAAATTCGATCTAAATGAAGGCTTTGTCGTGGATGATGGGAAATTTGGTGAACCACTTAATAAATTGACAACTCCGTCGTATCCTGTTCATTTGATGAACCAAGTGCCTTTTCCTCTTTCTTCGGTCTCCAGCTGCCTTCCTGCTTCAGTTACAGTTGCTGCTGCTGCAAAAAGGCCCTTTCTTCCTCCAGAGGATCTACTGAGGTGTAAAGGGGAACTTGGATGGAAGGGGTCAGCTGCAACTAGTGCATTTCGACCTGCTGAACCCAGAAAGGCTCCAGAGGTGCCATTAGTAACGACTAGCATAACTCTCCCCAATGCTACTGCAACCAGACCTGGGCGCCCTCTGTTGGATATTGATCTGAATGCACCAGGTGAAGCAGTTCCTGACGACATGGCTTCTCAAGACACCAATTTGTCACGGAATGAACTGATGGGTTCTGCACCTGCTCGTGGCTCTGGAGGGCTTGGTCTTGATTTGAACCAAGTCGACGAGGCTAATGATATAGAGCACTACTCAACAAGCAGCAGTCGTGGATTGGATTTCCCGCTTCTGCCAGTTAAATCATCATCAAGTGGGTTTCCTGGTGGTGAGGTGCGTAGGGTCTTTGATTTAAACAATGGGCCTGCCCTTGAAGATGCGAGTGCTGAACCGTTGTTTAACCGGCAAGGCAGTGCTATCATGCAATCGCAGCCACATCTTGGCAGCATGAGAGTTAATCGTGCAGAAGTAGGCAACTTTTCATCGTGGTTTGCTCCTCCTGGGAATACTTGCTCACCGGTTGGGCTGCCATCAGTGTTGCCCAATAGAGGGGAGAAGCCCTTTCATGTATTTGCACCTGGTGGTGCACCACAAAGAATATTGGGTCCTCCAGCCGGCAGTGGCTCCCATTTTACACCGGATGTCTACTGGGGTTCGGTGTTCTCATCATCAACTCCTACAGTACCCTTTCCCTCGACCCCGTTCCAGTATCCTGTTGTCCCCTATATGACCAGTTTTCCCCTGCCCTCTTCTAGTGGGTCAGCCACTTACATGGATTCACCATCTGGTGGGAGAATCTGTTTCCCTGCCATTAGTAATTCACAGCTACAAGGACCTGTTGCAGTGGGAGGTTCATCTCAACACCCAAGGCCTTATATGGTTGGTAGCCTCCCAGATGGTAGCAGCAATGGTGGTGGTGTGGAGAACCATCGAAAATGGGGGGGTAGGCAGGGTCTAGATCTTAACGCAGGCCCCGGCGCCCTGGATATTGAAGGGAGAGATGAGACATTTCCTCTAGCGTCAAGAAAGCATTCTTTTGCTAGCCCACAAGCTCTAGCCGAGGAGCAGCAGCAGCAGCAACAGTCAAGGCCGATGTTGCCAATGGTTGGAGGCGGTCTTATGAAGAGAAAGGAGCCCGAAGGTGGTGGTTGGGACAATGAGGGCTTCAGGTACAAGCAATCGTCATGGCAGTGA

Network for GWHGAAZE030554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	30	136	9.20E-08
PF08711.12	Med26	345	394	1.30E-09

Protein Sequence

>GWHPAAZE030572
MCSVPPRGVTVAGDTVASTSDSFFKDGRRISIGDCALFKPSESYLPFIGIIRWLSFSKNNNLQLGVNWLYRPAEVKLGKGILPDAEPNEIFYSFHKDEIPAASLLHPCKVAFLPKGVELSPGISSFVCRQVYDIANKCLWWLTDQDYIDEQQQEVDQLLYKTRIEMHTVQPGGRSPKPLSVNTSTSQSKPTSDNVQSSANSFPSQVKRKKREQRDLGSEPSKRERSSKSDDGDSGQFKAESVLKSEIAKITEKGGLMNSEGVEKLVQLMKPDREERKMDLVSRSMLAGVIAATDRFDCLSWFVQLKGLPVLDEWLQDIHRGKIGDGSSIPLKNGDKSVEDFLLLLLRALDKLPVNLHALQMCNIGRSVNHLRTNKNLEIQKKARSLVDTWKKRVEAEMNSIDSKSGSSQPVSWSSKSRLPEVSHGGNRHPGGSSEIAMKSPVQHFSASKTSSAIKPVRGETTTKSASSSPRPMKAALSPGSGKDGHPRISAYSGGGTFEDRSVVNGRAASPVLLEKHDQSVSDSKEGEGYAIKYLEKWESDGSPDAIHDEERSRMADDTRKSREVSKAGSLSSGNELESGKLDVFKLADEASFSTLRSLIESCVKYSEANASLSVGDDVGMELLASVAAGEVSNSDHVSPTNSPQRNKPEIEDTCVANDDSSKVSSTDILACQSQPDNCVDRDIEQGNFAGTSRSKGGLDSCEPASEEPSARNSCSMDLQATADPFIENNEKSDNMKVAANVAASPGSMTENLMDVKVGNREENAVINDTSLDGIPDVNLRGVNPLLTKVNDIRGSVEDDKRAVEISSSSHLLENEGENIVEEGLGGGGNAEQKPATVRMKPEHIDEKDEKILQFSNSVKKLVPEEPKVRKVEELDMSSVNQAEKQFGQETDNVKDIENQGWVGLGSAITNQKSDCKDENIKSEEVLEQSNSGIIPHKDSLASPSQGTDLHGRLKGLKLPAVEAAETEECASTTADISLFSASGPQHMAAKVKFDLNEGFVVDDGKFGEPLNKLTTPSYPVHLMNQVPFPLSSVSSCLPASVTVAAAAKRPFLPPEDLLRCKGELGWKGSAATSAFRPAEPRKAPEVPLVTTSITLPNATATRPGRPLLDIDLNAPGEAVPDDMASQDTNLSRNELMGSAPARGSGGLGLDLNQVDEANDIEHYSTSSSRGLDFPLLPVKSSSSGFPGGEVRRVFDLNNGPALEDASAEPLFNRQGSAIMQSQPHLGSMRVNRAEVGNFSSWFAPPGNTCSPVGLPSVLPNRGEKPFHVFAPGGAPQRILGPPAGSGSHFTPDVYWGSVFSSSTPTVPFPSTPFQYPVVPYMTSFPLPSSSGSATYMDSPSGGRICFPAISNSQLQGPVAVGGSSQHPRPYMVGSLPDGSSNGGGVENHRKWGGRQGLDLNAGPGALDIEGRDETFPLASRKHSFASPQALAEEQQQQQQSRPMLPMVGGGLMKRKEPEGGGWDNEGFRYKQSSWQ

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.369
	SRR3591706	second leaf	16.122
	SRR3591707	mature leaf	22.175
	SRR3591708	Shoot apex	19.432
	SRR3591709	Stem	27.257
	SRR3591710	White floral bud	30.306
	SRR3591711	White flower	33.365
	SRR3591712	Green floral bud	24.815
	SRR3591713	Yellow flower	28.368
SRP173429	SRR8316895	Juvenile bud stage	12.453
	SRR8316896	Juvenile bud stage	17.570
	SRR8316897	Juvenile bud stage	7.219
	SRR8316894	Third green stage	8.389
	SRR8316900	Third green stage	19.581
	SRR8316901	Third green stage	19.288
	SRR8316898	Complete white stage	6.999
	SRR8316899	Complete white stage	27.922
	SRR8316903	Complete white stage	17.573
	SRR8316902	Silver flowering stage	9.404
	SRR8316904	Silver flowering stage	14.956
	SRR8316905	Silver flowering stage	6.648
	SRR8316906	Gold flowering stage	25.308
	SRR8316907	Gold flowering stage	21.243
	SRR8316908	Gold flowering stage	22.934
SRP132670	SRR6706286	Control	24.179
	SRR6706287	Light intensity 50%	24.272
	SRR6706288	Light intensity 20%	24.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.889
	CNS0095593	Slightly white alabastrum(diploid) 2	10.618
	CNS0095594	Slightly white alabastrum(diploid) 3	10.036
	CNS0095595	Whole white alabastrum(diploid) 2	10.092
	CNS0095596	Whole white alabastrum(diploid) 3	8.458
	CNS0095597	Whole white alabastrum(diploid) 4	11.260
	CNS0095598	Silvery flower (diploied) 1	16.659
	CNS0095599	Silvery flower (diploied) 2	15.020
	CNS0095600	Silvery flower (diploied) 3	35.720
	CNS0095601	Golden flower (diploid) 1	17.153
	CNS0095602	Golden flower (diploid) 2	41.912
	CNS0095603	Golden flower (diploid) 3	36.466
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.042
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.636
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.740
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.713
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.043
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.140
	CNS0095610	Silvery flower (tetraploid) 1	30.563
	CNS0095611	Silvery flower (tetraploid) 2	29.360
	CNS0095612	Silvery flower (tetraploid) 3	29.975
	CNS0095613	Golden flower (tetraploid) 1	15.750
	CNS0095614	Golden flower (tetraploid) 2	29.918
	CNS0095615	Golden flower (tetraploid) 3	38.708
CRA001975	CRR073297	Stem 1	26.139
	CRR073298	Stem 2	24.506
	CRR073299	Stem 3	24.544
	CRR073300	Leaf 1	32.925
	CRR073301	Leaf 2	25.357
	CRR073302	Leaf 3	22.854
	CRR073303	Juvenile bud 1	25.086
	CRR073304	Juvenile bud 2	20.257
	CRR073305	Juvenile bud 3	43.464
	CRR073306	Third green 1	21.660
	CRR073307	Third green 2	16.465
	CRR073308	Third green 3	21.965
	CRR073309	Second white 1	20.270
	CRR073310	Second white 2	21.425
	CRR073311	Second white 3	30.167
	CRR073312	Silver flowering 1	26.777
	CRR073313	Silver flowering 2	26.768
	CRR073314	Silver flowering 3	25.897
	CRR073315	Gold flowering 1	10.279
	CRR073316	Gold flowering 2	15.632
	CRR073317	Gold flowering 3	13.800
	CRR073318	Tawny withering 1	20.940
	CRR073319	Tawny withering 2	13.007
	CRR073320	Tawny withering 3	18.291