Detail information of GWHGAAZE030558


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009590601.12.1159E-113PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
Swissprottr|Q94JX5|WLIM1_ARATH3E-87LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|W9S883|W9S883_9ROSA5E-112Pollen-specific protein SF3 {ECO:0000313|EMBL:EXC31177.1}
TAIR10AT1G10200.13E-69GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4527372845277174-
GWHAAZE00000009mRNA4527372845277174-
GWHAAZE00000009exon4527703745277174-
GWHAAZE00000009exon4527455645274652-
GWHAAZE00000009exon4527441745274454-
GWHAAZE00000009exon4527419045274279-
GWHAAZE00000009exon4527372845274015-
GWHAAZE00000009CDS4527703745277174-
GWHAAZE00000009CDS4527455645274652-
GWHAAZE00000009CDS4527441745274454-
GWHAAZE00000009CDS4527419045274279-
GWHAAZE00000009CDS4527372845274015-
Transcript Sequence

Network for GWHGAAZE030558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM11654.40E-10
PF00412.23LIM1091641.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.163
SRR3591706second leaf5.394
SRR3591707mature leaf9.708
SRR3591708Shoot apex14.363
SRR3591709Stem85.853
SRR3591710White floral bud3.436
SRR3591711White flower6.816
SRR3591712Green floral bud2.847
SRR3591713Yellow flower6.594
SRP173429 SRR8316895Juvenile bud stage 1.198
SRR8316896Juvenile bud stage 1.732
SRR8316897Juvenile bud stage 1.992
SRR8316894Third green stage 0.598
SRR8316900Third green stage 2.211
SRR8316901Third green stage 2.638
SRR8316898Complete white stage 0.665
SRR8316899Complete white stage 8.922
SRR8316903Complete white stage 3.069
SRR8316902Silver flowering stage0.540
SRR8316904Silver flowering stage0.687
SRR8316905Silver flowering stage0.340
SRR8316906Gold flowering stage 6.026
SRR8316907Gold flowering stage 1.451
SRR8316908Gold flowering stage 11.952
SRP132670SRR6706286Control2.620
SRR6706287Light intensity 50%3.583
SRR6706288Light intensity 20%3.229
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.383
CNS0095593Slightly white alabastrum(diploid) 21.823
CNS0095594Slightly white alabastrum(diploid) 32.461
CNS0095595Whole white alabastrum(diploid) 21.822
CNS0095596Whole white alabastrum(diploid) 31.498
CNS0095597Whole white alabastrum(diploid) 41.958
CNS0095598Silvery flower (diploied) 12.766
CNS0095599Silvery flower (diploied) 21.552
CNS0095600Silvery flower (diploied) 31.469
CNS0095601Golden flower (diploid) 12.737
CNS0095602Golden flower (diploid) 23.742
CNS0095603Golden flower (diploid) 32.500
CNS0095604Slightly white alabastrum(tetraploid) 12.840
CNS0095605Slightly white alabastrum(tetraploid) 20.748
CNS0095606Slightly white alabastrum(tetraploid) 35.528
CNS0095607Whole white alabastrum(tetraploid) 12.033
CNS0095608Whole white alabastrum(tetraploid) 21.540
CNS0095609Whole white alabastrum(tetraploid) 33.733
CNS0095610Silvery flower (tetraploid) 10.905
CNS0095611Silvery flower (tetraploid) 20.987
CNS0095612Silvery flower (tetraploid) 31.349
CNS0095613Golden flower (tetraploid) 10.684
CNS0095614Golden flower (tetraploid) 22.575
CNS0095615Golden flower (tetraploid) 30.533
CRA001975CRR073297Stem 10.819
CRR073298Stem 20.948
CRR073299Stem 30.865
CRR073300Leaf 12.817
CRR073301Leaf 21.742
CRR073302Leaf 30.842
CRR073303Juvenile bud 11.080
CRR073304Juvenile bud 20.473
CRR073305Juvenile bud 32.807
CRR073306Third green 10.000
CRR073307Third green 20.433
CRR073308Third green 30.803
CRR073309Second white 10.000
CRR073310Second white 20.504
CRR073311Second white 30.000
CRR073312Silver flowering 10.151
CRR073313Silver flowering 20.021
CRR073314Silver flowering 30.331
CRR073315Gold flowering 13.177
CRR073316Gold flowering 21.668
CRR073317Gold flowering 32.271
CRR073318Tawny withering 111.443
CRR073319Tawny withering 215.758
CRR073320Tawny withering 316.366