Gene detail

Detail information of GWHGAAZE030568

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036086.1	0	ADP-glucose pyrophosphorylase family protein isoform 1 [Theobroma cacao]
COG	YP_003646035.1	6E-30	nucleotidyl transferase
Swissprot	tr\|Q941T9\|GMPP2_ORYSJ	1E-63	Probable mannose-1-phosphate guanylyltransferase 2
trEMBL	tr\|A0A061FU19\|A0A061FU19_THECC	0	ADP-glucose pyrophosphorylase family protein isoform 1 {ECO:0000313\|EMBL:EOY20588.1}
TAIR10	AT1G74910.2	0	ADP-glucose pyrophosphorylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45466147	45470197	+
GWHAAZE00000009	mRNA	45466147	45470197	+
GWHAAZE00000009	exon	45466147	45466473	+
GWHAAZE00000009	exon	45466599	45466696	+
GWHAAZE00000009	exon	45466907	45467007	+
GWHAAZE00000009	exon	45467112	45467190	+
GWHAAZE00000009	exon	45467343	45467403	+
GWHAAZE00000009	exon	45467785	45467831	+
GWHAAZE00000009	exon	45467960	45468052	+
GWHAAZE00000009	exon	45468181	45468271	+
GWHAAZE00000009	exon	45468764	45468812	+
GWHAAZE00000009	exon	45468980	45469096	+
GWHAAZE00000009	exon	45469205	45469352	+
GWHAAZE00000009	exon	45469561	45469653	+
GWHAAZE00000009	exon	45469735	45469803	+
GWHAAZE00000009	exon	45469929	45469971	+
GWHAAZE00000009	exon	45470097	45470197	+
GWHAAZE00000009	five_prime_UTR	45466147	45466415	+
GWHAAZE00000009	CDS	45466416	45466473	+
GWHAAZE00000009	CDS	45466599	45466696	+
GWHAAZE00000009	CDS	45466907	45467007	+
GWHAAZE00000009	CDS	45467112	45467190	+
GWHAAZE00000009	CDS	45467343	45467403	+
GWHAAZE00000009	CDS	45467785	45467831	+
GWHAAZE00000009	CDS	45467960	45468052	+
GWHAAZE00000009	CDS	45468181	45468271	+
GWHAAZE00000009	CDS	45468764	45468812	+
GWHAAZE00000009	CDS	45468980	45469096	+
GWHAAZE00000009	CDS	45469205	45469352	+
GWHAAZE00000009	CDS	45469561	45469653	+
GWHAAZE00000009	CDS	45469735	45469803	+
GWHAAZE00000009	CDS	45469929	45469971	+
GWHAAZE00000009	CDS	45470097	45470197	+

Transcript Sequence
>GWHTAAZE030602 TCCTCTCTTTTTCTTTCTCTTTCTCTCTATCCGCACACATATATATATATACACACACGCGCAGAGTCAGTCATTGAGCGTACCATTAATTTTCTTTCTTGCTGCATCATTATTATTAATTTGTCTTTCGAATAATGCAAGATGTCCTTTCTACAAATATAAACTATTCAATTCCTGTTTCTCTTTAGTTTAGTAGACCTTCTTATTTATAAAATTCTCGAGGATATACTTAGAGATCTGTTGAACTTGTGTTTTTGTGGTTTGAGAAAATGGGAACCTCGGATGAGAGAGTTGTTGCTGTGATCATGGTTGGTGGACCCACCAAAGGTACTAGATTCCGGCCATTGTCACTGAATATACCAAAGCCACTTTTTCCATTGGCAGGGCAGCCTATGGTTCATCATCCTATTTCAGCTTGTAAAAGGATTCCAAACCTGGCTCAGATCTATCTTGTTGGTTTCTATGAGGAGCGTGAATTCGCATTATACGTCTCCTCAATCTCTAACGAGCTTAGAGTTCCTGTTAGGTATTTGAAAGAGGATAAGCCACATGGGTCAGCTGGTGGACTTTATAACTTCAGAGATCTGCTCATGGAAGACGATCCGTCCCATATCTTCTTGCTGAATTGTGATGTTTGCTGCAGTTTCCCACTACCTGAGATGCTTGAGGCTCATAAAAGATACGGTGGGATGGGAACTATCCTAGTAATCAAGGTTTCTGCCGAGTCAGCCAATCAGTTTGGGGAACTGGTTGCCGATCCTGTTACCAATGAATTATTGCATTACACAGAGAAGCCCGAAACCTTTGTGAGTGACAGGATAAATTGCGGTGTTTACGTGTTTACACCTGACATCTTCAATGCCATTCAAGGTGTTTCTACACAACGGAAAGACAGAGCAAATCTAAGACGTATGTCCAGCTTTGAAGCCCTCCAATCGGCTACAAGGAATCCTCCAACAGATTTCGTAAGATTGGATCAAGATATCCTATCACCTTTAGCCGGTAAAAAGCAGTTGTATACATATGAAACCATGGATTTCTGGGAACAAATAAAAACTCCTGGAATGTCTTTGAAATGCTCTGGCTTGTATCTTTACCAATTTCGGTTCACCTCCCCCCAGCTTCTGGCTAGTGGGGATGGTATAAAAAGTGCCACCATCATTGGTGATGTTTATATTCATCCATCAGCAAAAGTTCATCCAACAGCCAAGGTCGGTCCAAATGTCTCAGTAGCTGCCAATGCTCGCATAGGAGCTGGCGTGAGGCTTATCAGTTGTATTATTCTTGATGACGTTGAAATCAAAGAAAATGCGATTGTTATTCATTCAATTGTTGGTTGGAAATCTTCCATTGGAAGATGGTCTCGTGTCCAAGCCGAAGGAGATTACAATGCAAAGCTTGGGATTACAATACTTGGGGAAGATGTTACTGTTGAAGATGAAGTGGTGGTAATCAACAGCATTGTACTTCCACACAAGACTCTTAATGTTAGTGTTCAGCAAGAAATTATATTGTAG

Network for GWHGAAZE030568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	10	221	5.10E-29
PF00132.25	Hexapep	300	328	3.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00966	GMPP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	137.670
	SRR3591706	second leaf	99.483
	SRR3591707	mature leaf	42.931
	SRR3591708	Shoot apex	77.434
	SRR3591709	Stem	69.269
	SRR3591710	White floral bud	24.571
	SRR3591711	White flower	15.338
	SRR3591712	Green floral bud	53.795
	SRR3591713	Yellow flower	7.116
SRP173429	SRR8316895	Juvenile bud stage	64.114
	SRR8316896	Juvenile bud stage	67.964
	SRR8316897	Juvenile bud stage	39.121
	SRR8316894	Third green stage	43.244
	SRR8316900	Third green stage	111.118
	SRR8316901	Third green stage	103.121
	SRR8316898	Complete white stage	17.227
	SRR8316899	Complete white stage	99.619
	SRR8316903	Complete white stage	24.950
	SRR8316902	Silver flowering stage	3.502
	SRR8316904	Silver flowering stage	7.753
	SRR8316905	Silver flowering stage	2.505
	SRR8316906	Gold flowering stage	10.392
	SRR8316907	Gold flowering stage	7.601
	SRR8316908	Gold flowering stage	8.465
SRP132670	SRR6706286	Control	47.513
	SRR6706287	Light intensity 50%	56.807
	SRR6706288	Light intensity 20%	63.237
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	81.034
	CNS0095593	Slightly white alabastrum(diploid) 2	99.091
	CNS0095594	Slightly white alabastrum(diploid) 3	67.647
	CNS0095595	Whole white alabastrum(diploid) 2	63.229
	CNS0095596	Whole white alabastrum(diploid) 3	60.842
	CNS0095597	Whole white alabastrum(diploid) 4	56.310
	CNS0095598	Silvery flower (diploied) 1	55.576
	CNS0095599	Silvery flower (diploied) 2	60.923
	CNS0095600	Silvery flower (diploied) 3	31.280
	CNS0095601	Golden flower (diploid) 1	53.869
	CNS0095602	Golden flower (diploid) 2	48.877
	CNS0095603	Golden flower (diploid) 3	42.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	91.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	152.330
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.749
	CNS0095610	Silvery flower (tetraploid) 1	9.461
	CNS0095611	Silvery flower (tetraploid) 2	15.830
	CNS0095612	Silvery flower (tetraploid) 3	8.908
	CNS0095613	Golden flower (tetraploid) 1	5.630
	CNS0095614	Golden flower (tetraploid) 2	10.113
	CNS0095615	Golden flower (tetraploid) 3	5.401
CRA001975	CRR073297	Stem 1	82.807
	CRR073298	Stem 2	79.479
	CRR073299	Stem 3	67.106
	CRR073300	Leaf 1	97.775
	CRR073301	Leaf 2	94.437
	CRR073302	Leaf 3	96.891
	CRR073303	Juvenile bud 1	57.919
	CRR073304	Juvenile bud 2	46.975
	CRR073305	Juvenile bud 3	53.086
	CRR073306	Third green 1	6.052
	CRR073307	Third green 2	5.022
	CRR073308	Third green 3	9.615
	CRR073309	Second white 1	6.199
	CRR073310	Second white 2	3.187
	CRR073311	Second white 3	2.907
	CRR073312	Silver flowering 1	2.141
	CRR073313	Silver flowering 2	1.215
	CRR073314	Silver flowering 3	1.890
	CRR073315	Gold flowering 1	45.670
	CRR073316	Gold flowering 2	63.383
	CRR073317	Gold flowering 3	31.710
	CRR073318	Tawny withering 1	83.620
	CRR073319	Tawny withering 2	76.935
	CRR073320	Tawny withering 3	102.718