Gene detail

Detail information of GWHGAAZE030569

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266966.1	0	PREDICTED: anaphase-promoting complex subunit 8 [Vitis vinifera]
COG	YP_004577104.1	1E-11	hypothetical protein Metok_1361
Swissprot	tr\|Q9STS3\|CDC23_ARATH	0	Anaphase-promoting complex subunit 8
trEMBL	tr\|F6HGK7\|F6HGK7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51353.1}
TAIR10	AT3G48150.1	0	anaphase-promoting complex subunit 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45473959	45478433	+
GWHAAZE00000009	mRNA	45473959	45478433	+
GWHAAZE00000009	exon	45473959	45474044	+
GWHAAZE00000009	exon	45474136	45474448	+
GWHAAZE00000009	exon	45476954	45478204	+
GWHAAZE00000009	exon	45478344	45478433	+
GWHAAZE00000009	CDS	45473959	45474044	+
GWHAAZE00000009	CDS	45474136	45474448	+
GWHAAZE00000009	CDS	45476954	45478204	+
GWHAAZE00000009	CDS	45478344	45478433	+

Transcript Sequence
>GWHTAAZE030603 ATGGGTACAAAAGAGAGTTGCCGGAACGAGCTTCGAACTGCAATCCGTCAGTTAAGCAGCCGTTGCCTCTACTCCGCTTCCAAATGGGCAGCAGAACAGTTAATTGGGATAGAGCAAGACCCGGCCAAGTACACCCCTTCTCACACCCGATTCCAGCGTGGCACTTCCAGCATTCGCCGTCGATTTCGCACTACCGATGTCCACTCCACTCCGTCCGCCGGCGTATCCTACGTGACCACTCCGGCTCCCGACGATGACAACGATGATGTTGTTGACAGCGATTTTTACCTACTGGCCAAATCTTACTTCGATTGCCGAGAGTTCAAGAGGGCTGCTCATGTTCTCCGTGACCAGACCGGCAAGAAAGCTGTTTTCCTTCGCTGTTATGCTCTTTACCTGGCTGGAGAAAAGCGAAAAGAAGAAGAGATGATAGAACTCGAGGGACCCTTAGGCAAAAGTGATGCTCTGAACCATGAGCTGGTTTCTCTCGAGAGGGAGTTGTCTATGCTCCGCAAAAACAGCACAATTGACTCTTTTGGCCTTTACTTGTATGGTCTTGTTCTCAAAGAGAAAGGAAACGATAATCTTGCTTGCACCGTTCTTGCAGAGTCCGTAAATAGCTACCCTTGGAACTGGAGTGCTTGGTCAGAGCTACAGTCACTGTGCACTACAATTGAGACATTGAATGGTCTTAATCTCAATAATCATTGGATGAAAGACTTCTTTCTTGCGGCTGCTTATCAAGAACTACGTATGCACAATGAATCCTTGGCAAAATACGAGCATTTACAAGGAATTTTCAGTTTTAGTAACTACATCCAGGCACAAGTTGCTAAAACCCAGTACAGTCTGAGGGAATTTGAACAGGTCGAAGTTATATTCGAAGAACTTCTAAGGAACGATCCTTATCGAGTTGAAGACATGGATATGTACTCTAATGTCCTTTACGCAAAAGAGTGTTTCTCTGCTTTAAGCTACCTTGCCCACAGGGTATTTTTGACTGATAAATATAGACCCGAGTCTTGCTGCATTATCGGGAACTACTACAGTTTGAAAGGCCAGCATGAGAAGTCAGTTATGTATTTTAGGAGGGCACTTAAATTGAATAAAAAATATTTATCTGCATGGACACTAATGGGTCACGAGTATGTCGAGATGAAGAACACCCCAGCAGCCGTTGATGCATATCGGCGGGCCGTGGATATAAATCCGTGCGACTATCGTGCCTGGTATGGATTAGGACAAGCATACGAAATGATGGGAATGCCCTTTTACGCCCTTCATTACTTTCGAAAATCGGTGTTTCTGCAGCCAAATGATTCACGGTTGTGGATCGCGATGGCTCAGTGTTATGAGACGGATCAGCTTCATATGCTTGAAGAAGCAATCAAGTGTTACAGAAGGGCTGCAAATTGTAATGATAGGGAAGCGATCGCTCTTCACCAGTTAGCAAAGCTGCATAATGAGCTTGGACGTTCTGAAGAGGCTGCATTTTACTACAAAAAGGATTTGGAGAGGATGGAATCGGAAGAGAGGGAAGGACCAAACATGGTTGAAGCTTTGCTTTTCCTTGCCACACATTGCAAATCGCAGAAGAGATTTGAAGAAGCAGAAGTGTATTGTACGCGTCTTCTCGACTATACAGGCCCAGAAAAGGAAACAGCGAAAAGTCTACTACGAGGAATAAGATTTGCACAATCTGGATTTCCTTCTATGGATGTTGAGCATCTTCCTCCGTAA

Network for GWHGAAZE030569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04049.14	ANAPC8	7	159	7.80E-43
PF13181.7	TPR_8	340	371	2.80E-05
PF13414.7	TPR_11	380	421	1.60E-08
PF13176.7	TPR_7	479	511	0.019

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03355	APC8, CDC23	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0030071	biological_process	regulation of mitotic metaphase/anaphase transition
GO:0005680	cellular_component	anaphase-promoting complex
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.318
	SRR3591706	second leaf	4.040
	SRR3591707	mature leaf	4.449
	SRR3591708	Shoot apex	6.259
	SRR3591709	Stem	3.793
	SRR3591710	White floral bud	6.551
	SRR3591711	White flower	7.227
	SRR3591712	Green floral bud	5.944
	SRR3591713	Yellow flower	5.086
SRP173429	SRR8316895	Juvenile bud stage	3.314
	SRR8316896	Juvenile bud stage	3.619
	SRR8316897	Juvenile bud stage	1.443
	SRR8316894	Third green stage	1.854
	SRR8316900	Third green stage	4.502
	SRR8316901	Third green stage	4.326
	SRR8316898	Complete white stage	2.454
	SRR8316899	Complete white stage	6.959
	SRR8316903	Complete white stage	4.722
	SRR8316902	Silver flowering stage	2.856
	SRR8316904	Silver flowering stage	3.648
	SRR8316905	Silver flowering stage	1.615
	SRR8316906	Gold flowering stage	5.420
	SRR8316907	Gold flowering stage	2.721
	SRR8316908	Gold flowering stage	5.598
SRP132670	SRR6706286	Control	4.898
	SRR6706287	Light intensity 50%	5.052
	SRR6706288	Light intensity 20%	5.819
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.295
	CNS0095593	Slightly white alabastrum(diploid) 2	2.641
	CNS0095594	Slightly white alabastrum(diploid) 3	2.006
	CNS0095595	Whole white alabastrum(diploid) 2	1.982
	CNS0095596	Whole white alabastrum(diploid) 3	2.196
	CNS0095597	Whole white alabastrum(diploid) 4	1.386
	CNS0095598	Silvery flower (diploied) 1	3.224
	CNS0095599	Silvery flower (diploied) 2	3.046
	CNS0095600	Silvery flower (diploied) 3	6.782
	CNS0095601	Golden flower (diploid) 1	2.963
	CNS0095602	Golden flower (diploid) 2	4.656
	CNS0095603	Golden flower (diploid) 3	4.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.756
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.119
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.651
	CNS0095610	Silvery flower (tetraploid) 1	7.104
	CNS0095611	Silvery flower (tetraploid) 2	5.717
	CNS0095612	Silvery flower (tetraploid) 3	7.730
	CNS0095613	Golden flower (tetraploid) 1	2.958
	CNS0095614	Golden flower (tetraploid) 2	6.169
	CNS0095615	Golden flower (tetraploid) 3	4.519
CRA001975	CRR073297	Stem 1	5.022
	CRR073298	Stem 2	4.810
	CRR073299	Stem 3	5.116
	CRR073300	Leaf 1	4.861
	CRR073301	Leaf 2	2.687
	CRR073302	Leaf 3	3.658
	CRR073303	Juvenile bud 1	3.310
	CRR073304	Juvenile bud 2	3.501
	CRR073305	Juvenile bud 3	5.320
	CRR073306	Third green 1	1.606
	CRR073307	Third green 2	1.288
	CRR073308	Third green 3	1.867
	CRR073309	Second white 1	3.127
	CRR073310	Second white 2	2.919
	CRR073311	Second white 3	2.154
	CRR073312	Silver flowering 1	1.946
	CRR073313	Silver flowering 2	2.172
	CRR073314	Silver flowering 3	1.855
	CRR073315	Gold flowering 1	2.400
	CRR073316	Gold flowering 2	4.917
	CRR073317	Gold flowering 3	3.184
	CRR073318	Tawny withering 1	4.581
	CRR073319	Tawny withering 2	2.824
	CRR073320	Tawny withering 3	3.622