Detail information of GWHGAAZE030572


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14924.13.0137E-112unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V336|A0A068V336_COFCA1E-112Coffea canephora DH200=94 genomic scaffold, scaffold_92 {ECO:0000313|EMBL:CDP14924.1}
TAIR10AT5G62910.12E-48RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4550772245509852-
GWHAAZE00000009mRNA4550772245509852-
GWHAAZE00000009exon4550977545509852-
GWHAAZE00000009exon4550953045509596-
GWHAAZE00000009exon4550772245508909-
GWHAAZE00000009CDS4550977545509852-
GWHAAZE00000009CDS4550953045509596-
GWHAAZE00000009CDS4550807745508909-
GWHAAZE00000009three_prime_UTR4550772245508076-
Transcript Sequence

Network for GWHGAAZE030572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14570.7zf-RING_42502964.20E-19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.572
SRR3591706second leaf3.948
SRR3591707mature leaf7.114
SRR3591708Shoot apex4.971
SRR3591709Stem6.063
SRR3591710White floral bud7.860
SRR3591711White flower15.123
SRR3591712Green floral bud4.870
SRR3591713Yellow flower13.449
SRP173429 SRR8316895Juvenile bud stage 3.268
SRR8316896Juvenile bud stage 4.685
SRR8316897Juvenile bud stage 2.256
SRR8316894Third green stage 1.858
SRR8316900Third green stage 5.462
SRR8316901Third green stage 3.734
SRR8316898Complete white stage 3.991
SRR8316899Complete white stage 9.923
SRR8316903Complete white stage 4.832
SRR8316902Silver flowering stage5.370
SRR8316904Silver flowering stage6.614
SRR8316905Silver flowering stage3.403
SRR8316906Gold flowering stage 11.358
SRR8316907Gold flowering stage 10.161
SRR8316908Gold flowering stage 15.254
SRP132670SRR6706286Control5.097
SRR6706287Light intensity 50%5.575
SRR6706288Light intensity 20%4.549
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.096
CNS0095593Slightly white alabastrum(diploid) 25.509
CNS0095594Slightly white alabastrum(diploid) 36.586
CNS0095595Whole white alabastrum(diploid) 26.006
CNS0095596Whole white alabastrum(diploid) 33.473
CNS0095597Whole white alabastrum(diploid) 44.369
CNS0095598Silvery flower (diploied) 110.163
CNS0095599Silvery flower (diploied) 29.269
CNS0095600Silvery flower (diploied) 315.440
CNS0095601Golden flower (diploid) 19.446
CNS0095602Golden flower (diploid) 217.897
CNS0095603Golden flower (diploid) 318.233
CNS0095604Slightly white alabastrum(tetraploid) 14.270
CNS0095605Slightly white alabastrum(tetraploid) 24.428
CNS0095606Slightly white alabastrum(tetraploid) 36.404
CNS0095607Whole white alabastrum(tetraploid) 15.763
CNS0095608Whole white alabastrum(tetraploid) 23.372
CNS0095609Whole white alabastrum(tetraploid) 35.129
CNS0095610Silvery flower (tetraploid) 119.612
CNS0095611Silvery flower (tetraploid) 219.394
CNS0095612Silvery flower (tetraploid) 314.969
CNS0095613Golden flower (tetraploid) 119.211
CNS0095614Golden flower (tetraploid) 217.176
CNS0095615Golden flower (tetraploid) 324.050
CRA001975CRR073297Stem 17.789
CRR073298Stem 26.652
CRR073299Stem 38.157
CRR073300Leaf 17.089
CRR073301Leaf 25.763
CRR073302Leaf 37.949
CRR073303Juvenile bud 18.377
CRR073304Juvenile bud 27.139
CRR073305Juvenile bud 36.730
CRR073306Third green 15.965
CRR073307Third green 25.804
CRR073308Third green 34.880
CRR073309Second white 110.122
CRR073310Second white 210.338
CRR073311Second white 39.832
CRR073312Silver flowering 113.410
CRR073313Silver flowering 215.681
CRR073314Silver flowering 312.975
CRR073315Gold flowering 112.902
CRR073316Gold flowering 212.950
CRR073317Gold flowering 314.248
CRR073318Tawny withering 18.415
CRR073319Tawny withering 27.769
CRR073320Tawny withering 37.328