Detail information of GWHGAAZE030582


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002511485.16.27083E-765-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
COGYP_644097.17E-165-formyltetrahydrofolate cyclo-ligase
Swissprottr|Q8L539|5FCL_ARATH8E-645-formyltetrahydrofolate cyclo-ligase, mitochondrial (Precursor)
trEMBLtr|B9R910|B9R910_RICCO2E-765-formyltetrahydrofolate cyclo-ligase, putative {ECO:0000313|EMBL:EEF52087.1}
TAIR10AT5G13050.13E-525-formyltetrahydrofolate cycloligase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4564610545649138+
GWHAAZE00000009mRNA4564610545649138+
GWHAAZE00000009exon4564610545646120+
GWHAAZE00000009exon4564654945646701+
GWHAAZE00000009exon4564800345648044+
GWHAAZE00000009exon4564812645648171+
GWHAAZE00000009exon4564846845648538+
GWHAAZE00000009exon4564865145648786+
GWHAAZE00000009exon4564911745649138+
GWHAAZE00000009CDS4564610545646120+
GWHAAZE00000009CDS4564654945646701+
GWHAAZE00000009CDS4564800345648044+
GWHAAZE00000009CDS4564812645648171+
GWHAAZE00000009CDS4564846845648538+
GWHAAZE00000009CDS4564865145648786+
GWHAAZE00000009CDS4564911745649138+
Transcript Sequence

Network for GWHGAAZE030582

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01812.215-FTHF_cyc-lig61391.50E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01934MTHFS Metabolic pathways map01100
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.710
SRR3591706second leaf33.899
SRR3591707mature leaf55.989
SRR3591708Shoot apex27.566
SRR3591709Stem68.657
SRR3591710White floral bud23.209
SRR3591711White flower28.623
SRR3591712Green floral bud17.338
SRR3591713Yellow flower27.100
SRP173429 SRR8316895Juvenile bud stage 10.485
SRR8316896Juvenile bud stage 16.337
SRR8316897Juvenile bud stage 9.128
SRR8316894Third green stage 5.903
SRR8316900Third green stage 14.543
SRR8316901Third green stage 19.944
SRR8316898Complete white stage 10.048
SRR8316899Complete white stage 22.810
SRR8316903Complete white stage 13.680
SRR8316902Silver flowering stage8.509
SRR8316904Silver flowering stage9.714
SRR8316905Silver flowering stage6.288
SRR8316906Gold flowering stage 25.379
SRR8316907Gold flowering stage 18.588
SRR8316908Gold flowering stage 18.807
SRP132670SRR6706286Control8.408
SRR6706287Light intensity 50%8.838
SRR6706288Light intensity 20%10.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.846
CNS0095593Slightly white alabastrum(diploid) 227.656
CNS0095594Slightly white alabastrum(diploid) 320.295
CNS0095595Whole white alabastrum(diploid) 222.664
CNS0095596Whole white alabastrum(diploid) 313.712
CNS0095597Whole white alabastrum(diploid) 417.942
CNS0095598Silvery flower (diploied) 150.044
CNS0095599Silvery flower (diploied) 245.853
CNS0095600Silvery flower (diploied) 326.776
CNS0095601Golden flower (diploid) 143.619
CNS0095602Golden flower (diploid) 233.928
CNS0095603Golden flower (diploid) 336.124
CNS0095604Slightly white alabastrum(tetraploid) 118.358
CNS0095605Slightly white alabastrum(tetraploid) 219.584
CNS0095606Slightly white alabastrum(tetraploid) 321.012
CNS0095607Whole white alabastrum(tetraploid) 118.600
CNS0095608Whole white alabastrum(tetraploid) 218.173
CNS0095609Whole white alabastrum(tetraploid) 320.505
CNS0095610Silvery flower (tetraploid) 117.126
CNS0095611Silvery flower (tetraploid) 223.166
CNS0095612Silvery flower (tetraploid) 324.836
CNS0095613Golden flower (tetraploid) 125.705
CNS0095614Golden flower (tetraploid) 230.919
CNS0095615Golden flower (tetraploid) 335.081
CRA001975CRR073297Stem 115.026
CRR073298Stem 210.965
CRR073299Stem 312.552
CRR073300Leaf 112.452
CRR073301Leaf 210.895
CRR073302Leaf 39.231
CRR073303Juvenile bud 19.894
CRR073304Juvenile bud 214.178
CRR073305Juvenile bud 39.778
CRR073306Third green 17.188
CRR073307Third green 25.352
CRR073308Third green 38.366
CRR073309Second white 19.484
CRR073310Second white 212.733
CRR073311Second white 314.598
CRR073312Silver flowering 120.440
CRR073313Silver flowering 214.898
CRR073314Silver flowering 317.503
CRR073315Gold flowering 146.337
CRR073316Gold flowering 256.916
CRR073317Gold flowering 335.695
CRR073318Tawny withering 123.234
CRR073319Tawny withering 233.786
CRR073320Tawny withering 328.892