Gene detail

Detail information of GWHGAAZE030590

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266572.2	PREDICTED: uncharacterized protein LOC100267228 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6GTB7\|F6GTB7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43126.1}
TAIR10	AT1G18910.1	zinc ion binding;zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45739308	45748289	+
GWHAAZE00000009	mRNA	45739308	45748289	+
GWHAAZE00000009	exon	45739308	45739515	+
GWHAAZE00000009	exon	45740777	45740787	+
GWHAAZE00000009	exon	45740970	45741188	+
GWHAAZE00000009	exon	45742302	45742496	+
GWHAAZE00000009	exon	45742590	45742918	+
GWHAAZE00000009	exon	45743985	45744216	+
GWHAAZE00000009	exon	45744546	45746230	+
GWHAAZE00000009	exon	45746362	45746580	+
GWHAAZE00000009	exon	45746673	45746810	+
GWHAAZE00000009	exon	45747505	45747616	+
GWHAAZE00000009	exon	45747730	45747789	+
GWHAAZE00000009	exon	45748020	45748091	+
GWHAAZE00000009	exon	45748167	45748289	+
GWHAAZE00000009	CDS	45739308	45739515	+
GWHAAZE00000009	CDS	45740777	45740787	+
GWHAAZE00000009	CDS	45740970	45741188	+
GWHAAZE00000009	CDS	45742302	45742496	+
GWHAAZE00000009	CDS	45742590	45742918	+
GWHAAZE00000009	CDS	45743985	45744216	+
GWHAAZE00000009	CDS	45744546	45746230	+
GWHAAZE00000009	CDS	45746362	45746580	+
GWHAAZE00000009	CDS	45746673	45746810	+
GWHAAZE00000009	CDS	45747505	45747616	+
GWHAAZE00000009	CDS	45747730	45747789	+
GWHAAZE00000009	CDS	45748020	45748091	+
GWHAAZE00000009	CDS	45748167	45748268	+
GWHAAZE00000009	three_prime_UTR	45748269	45748289	+

Transcript Sequence
>GWHTAAZE030624 ATGGGCGGCGGTGATGTACCGAAATGCGGGGCAGAGGAAGAGGAAGAAACGGCAGAGCCACCACCTCTTGTTACGGTCGGAGGAGCTATTTCCGGGGTGGCGCTAGTGGAAGCTCCGATTCTGTTGCTTCTTCAATTTCATAAGGCTGTAAGGGAGGAGTTGACGGAGCTACGTCGAATTGCGGTGGAGGGGTCGGAGAAAAGGAATTTTGATGTCATGGTTATCTTTCTAGCATTAGATGTACACATAAAGAATGTGGTGTGTACGTACTCACTTGAACATAAAAGCATAGAGGACCTCTTCGACAATATTTTCCATTGTTTGAATATTCTGACAAAGGAAGATGAAGATCTTTCCAAGCCATTTCAAGAACTTGTTTTTTGCATTGGTACCATGCAGACCACTATTTGCCAGCATATGCTGAAAGAAGAAAAGCAGGTTTTTCCTCTGTTGATGCAGCAATTCACATCAAAAGAACAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTGTTCCTATAATTCTCTTGGAGGACTTTTTGCCATGGATGACATCTTTTCTTTCTCCAGACGAACGAATAGATTATATGAACTGTATAAAAGTAGTCGTACCCAAGGAAAATCTACTCCAAGAGGATGAGCAAACTTCTTTTGGGGCATACGGCAAGCATGGCAAAGGAACTCATGTTCTTAATGGACTTGCCAATTTCGAAGAAATGCTCAAACTGTGTGCGAGTGAGGCCTGTTATGTAGACGAACAGCTACTGAACAAAGCATTTTTTATCCCTACAACTGGTGGACACAATCCAGTTGATGGTATTAAGCTTTGGCATGGTGCCATCAGAAAAGATTTGAAAGAAATTTTGGAGGAGCTAGGTCAAATAAGAAGCAGCAACAGTTTTTCGACCTTGTCTTCAGTAGTCGTGCAGCTAAAGTTCTTTGCAGATATCCTCATCTTTTATAGCAATGCACTGGATAGGATCTTTTATCCCTTATGGAATGAACTTGCTAAAGGTTACCCATCTCTCTCCTACGAACCTATTTTGGATGGCAGTCAAATTGAAGGTCTACAGAGGTTGTTGTACTATAAGGCTCAGCATGCCTTGCCGTTAAAGAATTTTGTGGAAAAACTGTGTGGAGAAATGGAATCCTTTTCCAGGGTGATTAATAAACACCTGACTTTTCTTGAAACAGAGATTTTTCCCTTCATACGCATGAAGTGCAGTCAGGAAAGGCAGCAGTTGCTATTGTACAAAAGCCTTCAAATGATGCCACTTGGGTTGCTAAAGTGCATGATTACTTGGTTCTCTGCTCATTTATCCGAGGACGAATCCAAGTCCCTTCTTTATAGCATAAAGCAAGGAGGTGCTTTAGCAAATAAGTCTTTGGCATCTCTCATATGTGAGTGGGTACGTATGGGTTATTCGGGAAAAACTTCAGTTGAAAATTTTAGACAGGGCTTGCGAAAAATGTTCGATAGCAGGTGTTCTTTTCCTTCTGAACAACAACTAGAGGAGAAATCTAGCTATAGGCCGTTGGAAACAAACTCTGTCATCACAGCCAATACCCACACGTCTAGTTCTTCTTCTTCGGGATCCACCAGCACTAAAACGTATGATACATTATATTCTAGTGGGATCAATTTGCACGTCTTCTTCCCTCAAACATTGAAGATATCATCTACCCTTCCTGCATTTCCTTCTGGGAATAATGGTGCTAGTCCCTTTTCCAATCATGAATCTAGACCAATGGACCACATCTTGTTCTTCCACAAGGCTCTCAAGAAGGATTTGGAACACCTCGTCCTTGTTTCAGCAACGTTGGTGGAAAATCATGGGGTTTTCCCAGATTTCCATCGGCGTTTCCATCTTGTACGTTTTCTTTATCAAATACATAGTGATTCGGAGGATGATATTGCCTTCCCAGCTTTGGAGGCAAAGGGAAAATTCCGAAACATTAGCAACTCCTATGCCATTGACCACAAATTAGAAGTTGAGCATTTCAATAAGATTTCCCTTATTCTCGACGAAATATGTGAATTGCATTTGTTGGTTTCTCGAGGAGATGTGGATGCCTGGGGTCAAAAAATGCTGAAATACCGTCAGACGTGTGTGAAGCTCCACGATATGTGCTTATCTATGCACAAAATACTGTTTGACCATATCAACCATGAAGAAATTGAACTTTGGCCATTATTTGAGGAGCACTTCTCCATTCAGGAGCAAGAGAAGATCATAGGATGCATGCTTGGCAGAATAAGAGCAGAAATTCTACAAGAAATGATACCCTGGCTGATGGCATATTTAACAAGAGAAGAACAGCATGCCATAATGTCTGTATGGCGAAAAGCTACCAAAAATACTATGTTCGACGAATGGTTAGGTGAATGGTGGGAAGGTATGAGAGAACTTGGTAGAGATACGGTGGAAACAGAATCAAATATTCTACCTTCACATACGGCAGATCCACTGGAGGTTGTCTCAGCATATTTGTCAAGGGAAGGTTTTGATGATCAAGTATGCAAGAAAAGCACAGAATTTCTACAAACTGATTTTGATGATTATAAAACCAAGCCAACAGGAACCGTCGATACGGATGATAAAGAAGAAGCTTTGAATAAAGACCAATATGGTCACCAATCCTCAGAGTGTACTAACTTTTCTGGCAAGGTTCACAAGAAGAGATTCAATGAAATAGCAGATGCTACTGATCAAGCTGATAAACAAAGCAAGGCTGTACAAGTTAGCCAGATGTCGGAGCATGAGGATAACCTTCTGGTAATGAATCAAGAGGAACTGGAGGCTGCAATAAGACGAGTATCTCGTGACTGTACTTTGGATCCTGGAAAGAAATCATACATAATCCAAAATATGCTAATGAGCCGTTGGATTGCTACACAGCAGAAATCACATCAAGAGGTCACCTTTTCACACAATAGGGAAGAAGTTCCAGGTCAGTTCCCATCCTATCGGGACCCTCTCAAGTTGACATTTGGTTGCAAACACTACAAGAGGAGCTGTAAGCTTCTTGCTTCCTGTTGCAACAAATTATATGCTTGCAGATACTGCCATGATGATGTTGCTGATCATCCAATGGAGAGAAAAGCCACCACCAAGATGATGTGCATGAAGTGCCTGATAATTCAACCCATTGGTCCCACATGTTCAACTGTTTCTTGCCATGATCGTTCCATGGCAAGATACTACTGCAGGATCTGCAAATTTTTTGATGACGAGAGAGAGAAGTGCTTTGAAGATTTTTGTCCGATTTGCCACGAATTTATATTTACATCGAGTGCCCCAGTAAAGGCTCTTCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGACTACACTTGCACCCACTATACCTGCCCAGTTTGTAGCAAGTCTCTTGGGGACATGCAGGTATATTTTGGGATGATAGATGCCCTGTTGGCTGAAGAGAAAATGCCGGATGAGTATGCTGGCCAGACTCAGGTCATATTATGCAATGATTGTGAAAAGAGAGGATCAGCTTCCTTCCATTGGCTCTACCATAAATGCCCTTGTTGTGGTTCATTTAATACCAGACTATTATGACAGACACTTGGTGAGTGCGAC

Network for GWHGAAZE030590

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05495.13	zf-CHY	999	1074	5.70E-17
PF13639.7	zf-RING_2	1087	1128	1.50E-06
PF14599.7	zinc_ribbon_6	1134	1191	6.80E-23

Protein Sequence

>GWHPAAZE030608
MGGGDVPKCGAEEEEETAEPPPLVTVGGAISGVALVEAPILLLLQFHKAVREELTELRRIAVEGSEKRNFDVMVIFLALDVHIKNVVCTYSLEHKSIEDLFDNIFHCLNILTKEDEDLSKPFQELVFCIGTMQTTICQHMLKEEKQVFPLLMQQFTSKEQASLVWQFMCSVPIILLEDFLPWMTSFLSPDERIDYMNCIKVVVPKENLLQEDEQTSFGAYGKHGKGTHVLNGLANFEEMLKLCASEACYVDEQLLNKAFFIPTTGGHNPVDGIKLWHGAIRKDLKEILEELGQIRSSNSFSTLSSVVVQLKFFADILIFYSNALDRIFYPLWNELAKGYPSLSYEPILDGSQIEGLQRLLYYKAQHALPLKNFVEKLCGEMESFSRVINKHLTFLETEIFPFIRMKCSQERQQLLLYKSLQMMPLGLLKCMITWFSAHLSEDESKSLLYSIKQGGALANKSLASLICEWVRMGYSGKTSVENFRQGLRKMFDSRCSFPSEQQLEEKSSYRPLETNSVITANTHTSSSSSSGSTSTKTYDTLYSSGINLHVFFPQTLKISSTLPAFPSGNNGASPFSNHESRPMDHILFFHKALKKDLEHLVLVSATLVENHGVFPDFHRRFHLVRFLYQIHSDSEDDIAFPALEAKGKFRNISNSYAIDHKLEVEHFNKISLILDEICELHLLVSRGDVDAWGQKMLKYRQTCVKLHDMCLSMHKILFDHINHEEIELWPLFEEHFSIQEQEKIIGCMLGRIRAEILQEMIPWLMAYLTREEQHAIMSVWRKATKNTMFDEWLGEWWEGMRELGRDTVETESNILPSHTADPLEVVSAYLSREGFDDQVCKKSTEFLQTDFDDYKTKPTGTVDTDDKEEALNKDQYGHQSSECTNFSGKVHKKRFNEIADATDQADKQSKAVQVSQMSEHEDNLLVMNQEELEAAIRRVSRDCTLDPGKKSYIIQNMLMSRWIATQQKSHQEVTFSHNREEVPGQFPSYRDPLKLTFGCKHYKRSCKLLASCCNKLYACRYCHDDVADHPMERKATTKMMCMKCLIIQPIGPTCSTVSCHDRSMARYYCRICKFFDDEREKCFEDFCPICHEFIFTSSAPVKALPCGHLMHSACFQDYTCTHYTCPVCSKSLGDMQVYFGMIDALLAEEKMPDEYAGQTQVILCNDCEKRGSASFHWLYHKCPCCGSFNTRLL

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.056
	SRR3591706	second leaf	5.752
	SRR3591707	mature leaf	2.011
	SRR3591708	Shoot apex	5.762
	SRR3591709	Stem	12.891
	SRR3591710	White floral bud	4.135
	SRR3591711	White flower	3.837
	SRR3591712	Green floral bud	3.748
	SRR3591713	Yellow flower	2.400
SRP173429	SRR8316895	Juvenile bud stage	2.378
	SRR8316896	Juvenile bud stage	3.172
	SRR8316897	Juvenile bud stage	2.638
	SRR8316894	Third green stage	1.219
	SRR8316900	Third green stage	2.459
	SRR8316901	Third green stage	2.568
	SRR8316898	Complete white stage	0.341
	SRR8316899	Complete white stage	3.180
	SRR8316903	Complete white stage	1.304
	SRR8316902	Silver flowering stage	0.627
	SRR8316904	Silver flowering stage	0.758
	SRR8316905	Silver flowering stage	0.363
	SRR8316906	Gold flowering stage	1.165
	SRR8316907	Gold flowering stage	0.810
	SRR8316908	Gold flowering stage	0.916
SRP132670	SRR6706286	Control	1.876
	SRR6706287	Light intensity 50%	1.445
	SRR6706288	Light intensity 20%	1.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.784
	CNS0095593	Slightly white alabastrum(diploid) 2	2.028
	CNS0095594	Slightly white alabastrum(diploid) 3	2.882
	CNS0095595	Whole white alabastrum(diploid) 2	1.822
	CNS0095596	Whole white alabastrum(diploid) 3	1.124
	CNS0095597	Whole white alabastrum(diploid) 4	1.679
	CNS0095598	Silvery flower (diploied) 1	1.323
	CNS0095599	Silvery flower (diploied) 2	1.389
	CNS0095600	Silvery flower (diploied) 3	1.290
	CNS0095601	Golden flower (diploid) 1	3.705
	CNS0095602	Golden flower (diploid) 2	2.161
	CNS0095603	Golden flower (diploid) 3	2.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.156
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.754
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.118
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.972
	CNS0095610	Silvery flower (tetraploid) 1	1.639
	CNS0095611	Silvery flower (tetraploid) 2	1.742
	CNS0095612	Silvery flower (tetraploid) 3	1.738
	CNS0095613	Golden flower (tetraploid) 1	0.737
	CNS0095614	Golden flower (tetraploid) 2	1.289
	CNS0095615	Golden flower (tetraploid) 3	0.666
CRA001975	CRR073297	Stem 1	2.558
	CRR073298	Stem 2	1.407
	CRR073299	Stem 3	1.305
	CRR073300	Leaf 1	1.733
	CRR073301	Leaf 2	1.289
	CRR073302	Leaf 3	0.942
	CRR073303	Juvenile bud 1	1.308
	CRR073304	Juvenile bud 2	0.529
	CRR073305	Juvenile bud 3	1.478
	CRR073306	Third green 1	0.343
	CRR073307	Third green 2	0.375
	CRR073308	Third green 3	0.309
	CRR073309	Second white 1	0.240
	CRR073310	Second white 2	0.450
	CRR073311	Second white 3	0.111
	CRR073312	Silver flowering 1	0.115
	CRR073313	Silver flowering 2	0.059
	CRR073314	Silver flowering 3	0.107
	CRR073315	Gold flowering 1	0.299
	CRR073316	Gold flowering 2	0.656
	CRR073317	Gold flowering 3	0.359
	CRR073318	Tawny withering 1	3.548
	CRR073319	Tawny withering 2	2.753
	CRR073320	Tawny withering 3	2.357