Detail information of GWHGAAZE030591


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007026014.17.9895E-103LOB domain-containing protein, putative [Theobroma cacao]
Swissprottr|Q9STS6|LBD27_ARATH3E-59LOB domain-containing protein 27
trEMBLtr|A0A061GGF8|A0A061GGF8_THECC3E-103LOB domain-containing protein, putative {ECO:0000313|EMBL:EOY28636.1}
TAIR10AT3G47870.15E-50LOB domain-containing protein 27

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4575022845751043-
GWHAAZE00000009mRNA4575022845751043-
GWHAAZE00000009exon4575022845751043-
GWHAAZE00000009CDS4575022845751043-
Transcript Sequence

Network for GWHGAAZE030591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB101061.40E-37
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.900
SRR3591706second leaf0.200
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.175
SRR3591709Stem0.132
SRR3591710White floral bud0.354
SRR3591711White flower0.000
SRR3591712Green floral bud35.288
SRR3591713Yellow flower0.090
SRP173429 SRR8316895Juvenile bud stage 14.944
SRR8316896Juvenile bud stage 47.613
SRR8316897Juvenile bud stage 31.109
SRR8316894Third green stage 18.540
SRR8316900Third green stage 45.270
SRR8316901Third green stage 46.798
SRR8316898Complete white stage 0.097
SRR8316899Complete white stage 0.270
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.148
SRR8316907Gold flowering stage 0.115
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control15.320
SRR6706287Light intensity 50%14.600
SRR6706288Light intensity 20%12.918
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.776
CNS0095593Slightly white alabastrum(diploid) 234.430
CNS0095594Slightly white alabastrum(diploid) 368.489
CNS0095595Whole white alabastrum(diploid) 243.662
CNS0095596Whole white alabastrum(diploid) 358.793
CNS0095597Whole white alabastrum(diploid) 449.726
CNS0095598Silvery flower (diploied) 11.326
CNS0095599Silvery flower (diploied) 20.741
CNS0095600Silvery flower (diploied) 30.003
CNS0095601Golden flower (diploid) 10.235
CNS0095602Golden flower (diploid) 20.086
CNS0095603Golden flower (diploid) 30.083
CNS0095604Slightly white alabastrum(tetraploid) 187.381
CNS0095605Slightly white alabastrum(tetraploid) 283.467
CNS0095606Slightly white alabastrum(tetraploid) 30.451
CNS0095607Whole white alabastrum(tetraploid) 187.446
CNS0095608Whole white alabastrum(tetraploid) 278.642
CNS0095609Whole white alabastrum(tetraploid) 343.810
CNS0095610Silvery flower (tetraploid) 10.066
CNS0095611Silvery flower (tetraploid) 20.154
CNS0095612Silvery flower (tetraploid) 30.411
CNS0095613Golden flower (tetraploid) 10.125
CNS0095614Golden flower (tetraploid) 20.216
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 116.080
CRR073298Stem 217.581
CRR073299Stem 37.574
CRR073300Leaf 124.133
CRR073301Leaf 221.628
CRR073302Leaf 314.452
CRR073303Juvenile bud 15.307
CRR073304Juvenile bud 21.681
CRR073305Juvenile bud 30.112
CRR073306Third green 10.127
CRR073307Third green 20.000
CRR073308Third green 30.146
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.065
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.124
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.325
CRR073316Gold flowering 20.246
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.482
CRR073319Tawny withering 20.283
CRR073320Tawny withering 30.940