Detail information of GWHGAAZE030592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266656.10PREDICTED: uncharacterized protein LOC100256959 isoform X1 [Vitis vinifera]
trEMBLtr|F6GTB6|F6GTB6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43125.1}
TAIR10AT3G47890.10Ubiquitin carboxyl-terminal hydrolase-related protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4575378545770945-
GWHAAZE00000009mRNA4575378545770945-
GWHAAZE00000009exon4576837845770945-
GWHAAZE00000009exon4576817345768301-
GWHAAZE00000009exon4576793145768074-
GWHAAZE00000009exon4576779545767844-
GWHAAZE00000009exon4576737545767696-
GWHAAZE00000009exon4576710845767237-
GWHAAZE00000009exon4576686045767030-
GWHAAZE00000009exon4576619945766312-
GWHAAZE00000009exon4576477345764969-
GWHAAZE00000009exon4576446445764679-
GWHAAZE00000009exon4576406445764339-
GWHAAZE00000009exon4576380545763952-
GWHAAZE00000009exon4576350245763635-
GWHAAZE00000009exon4575527645755362-
GWHAAZE00000009exon4575378545753871-
GWHAAZE00000009CDS4576837845770945-
GWHAAZE00000009CDS4576817345768301-
GWHAAZE00000009CDS4576793145768074-
GWHAAZE00000009CDS4576779545767844-
GWHAAZE00000009CDS4576737545767696-
GWHAAZE00000009CDS4576710845767237-
GWHAAZE00000009CDS4576686045767030-
GWHAAZE00000009CDS4576619945766312-
GWHAAZE00000009CDS4576477345764969-
GWHAAZE00000009CDS4576446445764679-
GWHAAZE00000009CDS4576406445764339-
GWHAAZE00000009CDS4576380545763952-
GWHAAZE00000009CDS4576350245763635-
GWHAAZE00000009CDS4575527645755362-
GWHAAZE00000009CDS4575378545753871-
Transcript Sequence

Network for GWHGAAZE030592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04781.13DUF627811913.20E-33
PF04780.13DUF6293488443.00E-137
PF00443.30UCH125715842.40E-22
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016579biological_processprotein deubiquitination
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.399
SRR3591706second leaf12.374
SRR3591707mature leaf17.798
SRR3591708Shoot apex17.032
SRR3591709Stem22.445
SRR3591710White floral bud22.874
SRR3591711White flower25.441
SRR3591712Green floral bud30.431
SRR3591713Yellow flower14.203
SRP173429 SRR8316895Juvenile bud stage 11.974
SRR8316896Juvenile bud stage 15.812
SRR8316897Juvenile bud stage 7.874
SRR8316894Third green stage 10.539
SRR8316900Third green stage 29.182
SRR8316901Third green stage 24.989
SRR8316898Complete white stage 7.127
SRR8316899Complete white stage 29.768
SRR8316903Complete white stage 16.078
SRR8316902Silver flowering stage5.869
SRR8316904Silver flowering stage13.300
SRR8316905Silver flowering stage5.057
SRR8316906Gold flowering stage 16.401
SRR8316907Gold flowering stage 15.043
SRR8316908Gold flowering stage 18.548
SRP132670SRR6706286Control17.794
SRR6706287Light intensity 50%19.679
SRR6706288Light intensity 20%21.630
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.236
CNS0095593Slightly white alabastrum(diploid) 28.710
CNS0095594Slightly white alabastrum(diploid) 36.884
CNS0095595Whole white alabastrum(diploid) 210.707
CNS0095596Whole white alabastrum(diploid) 39.826
CNS0095597Whole white alabastrum(diploid) 411.353
CNS0095598Silvery flower (diploied) 113.069
CNS0095599Silvery flower (diploied) 212.779
CNS0095600Silvery flower (diploied) 325.488
CNS0095601Golden flower (diploid) 111.599
CNS0095602Golden flower (diploid) 223.218
CNS0095603Golden flower (diploid) 324.755
CNS0095604Slightly white alabastrum(tetraploid) 111.441
CNS0095605Slightly white alabastrum(tetraploid) 28.673
CNS0095606Slightly white alabastrum(tetraploid) 321.593
CNS0095607Whole white alabastrum(tetraploid) 111.214
CNS0095608Whole white alabastrum(tetraploid) 28.782
CNS0095609Whole white alabastrum(tetraploid) 319.762
CNS0095610Silvery flower (tetraploid) 120.463
CNS0095611Silvery flower (tetraploid) 220.396
CNS0095612Silvery flower (tetraploid) 312.493
CNS0095613Golden flower (tetraploid) 16.351
CNS0095614Golden flower (tetraploid) 214.079
CNS0095615Golden flower (tetraploid) 311.150
CRA001975CRR073297Stem 119.521
CRR073298Stem 218.835
CRR073299Stem 312.344
CRR073300Leaf 130.050
CRR073301Leaf 220.312
CRR073302Leaf 319.398
CRR073303Juvenile bud 115.357
CRR073304Juvenile bud 210.262
CRR073305Juvenile bud 326.334
CRR073306Third green 12.722
CRR073307Third green 21.849
CRR073308Third green 33.132
CRR073309Second white 12.330
CRR073310Second white 23.964
CRR073311Second white 34.385
CRR073312Silver flowering 12.916
CRR073313Silver flowering 22.706
CRR073314Silver flowering 33.039
CRR073315Gold flowering 13.768
CRR073316Gold flowering 28.015
CRR073317Gold flowering 33.272
CRR073318Tawny withering 19.644
CRR073319Tawny withering 28.503
CRR073320Tawny withering 37.781