Detail information of GWHGAAZE030608


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002511526.10isochorismate synthase, putative [Ricinus communis]
COGYP_003571417.12E-62menaquinone-specific isochorismate synthase
Swissprottr|Q9ZPC0|ICS_CATRO0Isochorismate synthase, chloroplastic (Precursor)
trEMBLtr|B9R951|B9R951_RICCO0Isochorismate synthase, putative {ECO:0000313|EMBL:EEF52128.1}
TAIR10AT1G74710.14E-175ADC synthase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4601231446023374-
GWHAAZE00000009mRNA4601231446023374-
GWHAAZE00000009exon4601231446012490-
GWHAAZE00000009exon4601274746012860-
GWHAAZE00000009exon4601320546013212-
GWHAAZE00000009exon4601328046013364-
GWHAAZE00000009exon4601558446015751-
GWHAAZE00000009exon4601629146016354-
GWHAAZE00000009exon4601645346016571-
GWHAAZE00000009exon4601673446016802-
GWHAAZE00000009exon4601689846016972-
GWHAAZE00000009exon4601720846017354-
GWHAAZE00000009exon4601885146018967-
GWHAAZE00000009exon4601906746019184-
GWHAAZE00000009exon4602063146020911-
GWHAAZE00000009exon4602295046023141-
GWHAAZE00000009exon4602325846023374-
GWHAAZE00000009CDS4602325846023374-
GWHAAZE00000009CDS4602295046023141-
GWHAAZE00000009CDS4602063146020911-
GWHAAZE00000009CDS4601906746019184-
GWHAAZE00000009CDS4601885146018967-
GWHAAZE00000009CDS4601720846017354-
GWHAAZE00000009CDS4601689846016972-
GWHAAZE00000009CDS4601673446016802-
GWHAAZE00000009CDS4601645346016571-
GWHAAZE00000009CDS4601629146016354-
GWHAAZE00000009CDS4601558446015751-
GWHAAZE00000009CDS4601328046013364-
GWHAAZE00000009CDS4601320546013212-
GWHAAZE00000009CDS4601274746012860-
GWHAAZE00000009CDS4601231446012490-
Transcript Sequence

Network for GWHGAAZE030608

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00425.19Chorismate_bind3014812.60E-27
PF00425.19Chorismate_bind4905861.50E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02552menF Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Biosynthesis of siderophore group nonribosomal peptidesmap01053

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.051
SRR3591706second leaf10.285
SRR3591707mature leaf5.464
SRR3591708Shoot apex9.084
SRR3591709Stem9.632
SRR3591710White floral bud3.943
SRR3591711White flower3.741
SRR3591712Green floral bud3.681
SRR3591713Yellow flower3.224
SRP173429 SRR8316895Juvenile bud stage 5.839
SRR8316896Juvenile bud stage 5.376
SRR8316897Juvenile bud stage 3.708
SRR8316894Third green stage 2.195
SRR8316900Third green stage 5.503
SRR8316901Third green stage 4.071
SRR8316898Complete white stage 2.121
SRR8316899Complete white stage 5.556
SRR8316903Complete white stage 3.184
SRR8316902Silver flowering stage1.671
SRR8316904Silver flowering stage2.745
SRR8316905Silver flowering stage1.194
SRR8316906Gold flowering stage 3.278
SRR8316907Gold flowering stage 1.710
SRR8316908Gold flowering stage 3.538
SRP132670SRR6706286Control5.528
SRR6706287Light intensity 50%5.738
SRR6706288Light intensity 20%5.738
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.125
CNS0095593Slightly white alabastrum(diploid) 23.407
CNS0095594Slightly white alabastrum(diploid) 33.307
CNS0095595Whole white alabastrum(diploid) 23.238
CNS0095596Whole white alabastrum(diploid) 32.610
CNS0095597Whole white alabastrum(diploid) 43.784
CNS0095598Silvery flower (diploied) 15.030
CNS0095599Silvery flower (diploied) 24.718
CNS0095600Silvery flower (diploied) 33.661
CNS0095601Golden flower (diploid) 15.136
CNS0095602Golden flower (diploid) 24.260
CNS0095603Golden flower (diploid) 33.189
CNS0095604Slightly white alabastrum(tetraploid) 16.189
CNS0095605Slightly white alabastrum(tetraploid) 25.959
CNS0095606Slightly white alabastrum(tetraploid) 38.513
CNS0095607Whole white alabastrum(tetraploid) 14.256
CNS0095608Whole white alabastrum(tetraploid) 22.547
CNS0095609Whole white alabastrum(tetraploid) 35.585
CNS0095610Silvery flower (tetraploid) 17.294
CNS0095611Silvery flower (tetraploid) 26.218
CNS0095612Silvery flower (tetraploid) 34.639
CNS0095613Golden flower (tetraploid) 14.328
CNS0095614Golden flower (tetraploid) 26.274
CNS0095615Golden flower (tetraploid) 33.405
CRA001975CRR073297Stem 19.225
CRR073298Stem 26.135
CRR073299Stem 35.466
CRR073300Leaf 16.604
CRR073301Leaf 24.242
CRR073302Leaf 32.073
CRR073303Juvenile bud 13.757
CRR073304Juvenile bud 21.511
CRR073305Juvenile bud 32.629
CRR073306Third green 10.216
CRR073307Third green 20.602
CRR073308Third green 30.249
CRR073309Second white 10.188
CRR073310Second white 20.441
CRR073311Second white 30.558
CRR073312Silver flowering 10.280
CRR073313Silver flowering 20.281
CRR073314Silver flowering 30.198
CRR073315Gold flowering 14.094
CRR073316Gold flowering 28.914
CRR073317Gold flowering 35.131
CRR073318Tawny withering 12.660
CRR073319Tawny withering 23.214
CRR073320Tawny withering 32.763