Detail information of GWHGAAZE030609


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABR45721.10P5CDH1 [Actinidia chinensis]
COGYP_004719251.12E-26aldehyde dehydrogenase
Swissprottr|Q8VZC3|AL121_ARATH0Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (Precursor)
trEMBLtr|A7YVW1|A7YVW1_ACTCH0P5CDH1 {ECO:0000313|EMBL:ABR45721.1}
TAIR10AT5G62530.10aldehyde dehydrogenase 12A1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4602421346031327-
GWHAAZE00000009mRNA4602421346031327-
GWHAAZE00000009exon4603123946031327-
GWHAAZE00000009exon4603051146030590-
GWHAAZE00000009exon4603011046030213-
GWHAAZE00000009exon4602984046029907-
GWHAAZE00000009exon4602913646029193-
GWHAAZE00000009exon4602891946029032-
GWHAAZE00000009exon4602844346028526-
GWHAAZE00000009exon4602795846028062-
GWHAAZE00000009exon4602708446027197-
GWHAAZE00000009exon4602654246026673-
GWHAAZE00000009exon4602612146026210-
GWHAAZE00000009exon4602588946025978-
GWHAAZE00000009exon4602541646025628-
GWHAAZE00000009exon4602476846024917-
GWHAAZE00000009exon4602444746024526-
GWHAAZE00000009exon4602421346024351-
GWHAAZE00000009CDS4603123946031327-
GWHAAZE00000009CDS4603051146030590-
GWHAAZE00000009CDS4603011046030213-
GWHAAZE00000009CDS4602984046029907-
GWHAAZE00000009CDS4602913646029193-
GWHAAZE00000009CDS4602891946029032-
GWHAAZE00000009CDS4602844346028526-
GWHAAZE00000009CDS4602795846028062-
GWHAAZE00000009CDS4602708446027197-
GWHAAZE00000009CDS4602654246026673-
GWHAAZE00000009CDS4602612146026210-
GWHAAZE00000009CDS4602588946025978-
GWHAAZE00000009CDS4602541646025628-
GWHAAZE00000009CDS4602476846024917-
GWHAAZE00000009CDS4602444746024526-
GWHAAZE00000009CDS4602421346024351-
Transcript Sequence

Network for GWHGAAZE030609

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00171.23Aldedh1334801.30E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00294E1.2.1.88 Metabolic pathways map01100
Alanine, aspartate and glutamate metabolismmap00250
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.930
SRR3591706second leaf28.247
SRR3591707mature leaf27.702
SRR3591708Shoot apex31.113
SRR3591709Stem27.302
SRR3591710White floral bud22.466
SRR3591711White flower20.662
SRR3591712Green floral bud43.778
SRR3591713Yellow flower17.049
SRP173429 SRR8316895Juvenile bud stage 28.512
SRR8316896Juvenile bud stage 43.844
SRR8316897Juvenile bud stage 20.410
SRR8316894Third green stage 17.966
SRR8316900Third green stage 57.879
SRR8316901Third green stage 51.599
SRR8316898Complete white stage 8.968
SRR8316899Complete white stage 34.111
SRR8316903Complete white stage 12.460
SRR8316902Silver flowering stage7.464
SRR8316904Silver flowering stage9.614
SRR8316905Silver flowering stage4.770
SRR8316906Gold flowering stage 17.454
SRR8316907Gold flowering stage 17.317
SRR8316908Gold flowering stage 22.724
SRP132670SRR6706286Control21.462
SRR6706287Light intensity 50%20.235
SRR6706288Light intensity 20%22.960
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.886
CNS0095593Slightly white alabastrum(diploid) 228.227
CNS0095594Slightly white alabastrum(diploid) 324.494
CNS0095595Whole white alabastrum(diploid) 227.125
CNS0095596Whole white alabastrum(diploid) 332.507
CNS0095597Whole white alabastrum(diploid) 426.663
CNS0095598Silvery flower (diploied) 124.705
CNS0095599Silvery flower (diploied) 221.114
CNS0095600Silvery flower (diploied) 329.858
CNS0095601Golden flower (diploid) 119.135
CNS0095602Golden flower (diploid) 226.578
CNS0095603Golden flower (diploid) 324.937
CNS0095604Slightly white alabastrum(tetraploid) 132.184
CNS0095605Slightly white alabastrum(tetraploid) 228.508
CNS0095606Slightly white alabastrum(tetraploid) 333.748
CNS0095607Whole white alabastrum(tetraploid) 125.861
CNS0095608Whole white alabastrum(tetraploid) 221.318
CNS0095609Whole white alabastrum(tetraploid) 345.974
CNS0095610Silvery flower (tetraploid) 123.470
CNS0095611Silvery flower (tetraploid) 231.754
CNS0095612Silvery flower (tetraploid) 315.974
CNS0095613Golden flower (tetraploid) 110.985
CNS0095614Golden flower (tetraploid) 217.660
CNS0095615Golden flower (tetraploid) 311.045
CRA001975CRR073297Stem 133.881
CRR073298Stem 230.422
CRR073299Stem 330.510
CRR073300Leaf 129.493
CRR073301Leaf 228.371
CRR073302Leaf 337.824
CRR073303Juvenile bud 133.746
CRR073304Juvenile bud 224.206
CRR073305Juvenile bud 332.051
CRR073306Third green 16.062
CRR073307Third green 24.164
CRR073308Third green 35.270
CRR073309Second white 110.068
CRR073310Second white 27.919
CRR073311Second white 38.247
CRR073312Silver flowering 110.576
CRR073313Silver flowering 28.567
CRR073314Silver flowering 35.967
CRR073315Gold flowering 111.982
CRR073316Gold flowering 221.553
CRR073317Gold flowering 311.831
CRR073318Tawny withering 116.633
CRR073319Tawny withering 211.756
CRR073320Tawny withering 320.308