Detail information of GWHGAAZE030613


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008804464.10PREDICTED: tubulin alpha chain-like [Phoenix dactylifera]
Swissprottr|P33629|TBA_PRUDU0Tubulin alpha chain
trEMBLtr|F6H5R4|F6H5R4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47535.1}
TAIR10AT1G50010.10tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4611037846113094+
GWHAAZE00000009mRNA4611037846113094+
GWHAAZE00000009exon4611037846110470+
GWHAAZE00000009exon4611062746110861+
GWHAAZE00000009exon4611193046112300+
GWHAAZE00000009exon4611243846113094+
GWHAAZE00000009CDS4611037846110470+
GWHAAZE00000009CDS4611062746110861+
GWHAAZE00000009CDS4611193046112300+
GWHAAZE00000009CDS4611243846113094+
Transcript Sequence

Network for GWHGAAZE030613

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin32131.70E-68
PF03953.18Tubulin_C2633925.80E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0003924molecular_functionGTPase activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf675.426
SRR3591706second leaf175.969
SRR3591707mature leaf15.931
SRR3591708Shoot apex429.254
SRR3591709Stem166.820
SRR3591710White floral bud317.548
SRR3591711White flower79.920
SRR3591712Green floral bud533.253
SRR3591713Yellow flower38.024
SRP173429 SRR8316895Juvenile bud stage 131.642
SRR8316896Juvenile bud stage 191.981
SRR8316897Juvenile bud stage 87.769
SRR8316894Third green stage 99.273
SRR8316900Third green stage 407.180
SRR8316901Third green stage 364.032
SRR8316898Complete white stage 130.308
SRR8316899Complete white stage 409.775
SRR8316903Complete white stage 166.660
SRR8316902Silver flowering stage38.448
SRR8316904Silver flowering stage65.910
SRR8316905Silver flowering stage25.304
SRR8316906Gold flowering stage 45.427
SRR8316907Gold flowering stage 45.936
SRR8316908Gold flowering stage 56.439
SRP132670SRR6706286Control375.595
SRR6706287Light intensity 50%446.017
SRR6706288Light intensity 20%505.079
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1201.419
CNS0095593Slightly white alabastrum(diploid) 2282.737
CNS0095594Slightly white alabastrum(diploid) 3155.497
CNS0095595Whole white alabastrum(diploid) 2260.026
CNS0095596Whole white alabastrum(diploid) 3281.520
CNS0095597Whole white alabastrum(diploid) 4255.517
CNS0095598Silvery flower (diploied) 160.383
CNS0095599Silvery flower (diploied) 2104.610
CNS0095600Silvery flower (diploied) 393.407
CNS0095601Golden flower (diploid) 142.406
CNS0095602Golden flower (diploid) 254.192
CNS0095603Golden flower (diploid) 350.222
CNS0095604Slightly white alabastrum(tetraploid) 1409.465
CNS0095605Slightly white alabastrum(tetraploid) 2312.961
CNS0095606Slightly white alabastrum(tetraploid) 3813.808
CNS0095607Whole white alabastrum(tetraploid) 1271.912
CNS0095608Whole white alabastrum(tetraploid) 2280.071
CNS0095609Whole white alabastrum(tetraploid) 3628.264
CNS0095610Silvery flower (tetraploid) 184.642
CNS0095611Silvery flower (tetraploid) 283.576
CNS0095612Silvery flower (tetraploid) 3133.720
CNS0095613Golden flower (tetraploid) 131.125
CNS0095614Golden flower (tetraploid) 260.234
CNS0095615Golden flower (tetraploid) 346.359
CRA001975CRR073297Stem 1371.144
CRR073298Stem 2378.820
CRR073299Stem 3486.994
CRR073300Leaf 1692.781
CRR073301Leaf 2587.768
CRR073302Leaf 3782.196
CRR073303Juvenile bud 11029.873
CRR073304Juvenile bud 2992.714
CRR073305Juvenile bud 3856.839
CRR073306Third green 1344.992
CRR073307Third green 2370.616
CRR073308Third green 3338.786
CRR073309Second white 1107.692
CRR073310Second white 277.099
CRR073311Second white 348.446
CRR073312Silver flowering 1105.872
CRR073313Silver flowering 2157.672
CRR073314Silver flowering 379.178
CRR073315Gold flowering 1121.986
CRR073316Gold flowering 292.346
CRR073317Gold flowering 3135.486
CRR073318Tawny withering 1396.670
CRR073319Tawny withering 2253.041
CRR073320Tawny withering 3480.137