Detail information of GWHGAAZE030632


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284906.10PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic [Vitis vinifera]
COGYP_007118354.10geranylgeranyl reductase
Swissprottr|Q9ZS34|CHLP_TOBAC0Geranylgeranyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|F6GT73|F6GT73_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43082.1}
TAIR10AT1G74470.10Pyridine nucleotide-disulphide oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4645911546460509-
GWHAAZE00000009mRNA4645911546460509-
GWHAAZE00000009exon4645911546460509-
GWHAAZE00000009CDS4645911546460509-
Transcript Sequence

Network for GWHGAAZE030632

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01134.23GIDA55893.30E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10960chlP, bchP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0015979biological_processphotosynthesis
GO:0015995biological_processchlorophyll biosynthetic process
GO:0051188biological_processcofactor biosynthetic process
GO:0016628molecular_functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0045550molecular_functiongeranylgeranyl reductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf268.805
SRR3591706second leaf1157.055
SRR3591707mature leaf805.349
SRR3591708Shoot apex588.141
SRR3591709Stem150.255
SRR3591710White floral bud80.104
SRR3591711White flower67.369
SRR3591712Green floral bud154.455
SRR3591713Yellow flower23.109
SRP173429 SRR8316895Juvenile bud stage 172.879
SRR8316896Juvenile bud stage 186.257
SRR8316897Juvenile bud stage 105.989
SRR8316894Third green stage 92.396
SRR8316900Third green stage 355.634
SRR8316901Third green stage 346.884
SRR8316898Complete white stage 50.484
SRR8316899Complete white stage 269.517
SRR8316903Complete white stage 75.282
SRR8316902Silver flowering stage13.526
SRR8316904Silver flowering stage20.567
SRR8316905Silver flowering stage11.213
SRR8316906Gold flowering stage 16.085
SRR8316907Gold flowering stage 13.570
SRR8316908Gold flowering stage 20.622
SRP132670SRR6706286Control536.708
SRR6706287Light intensity 50%499.183
SRR6706288Light intensity 20%527.576
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1177.637
CNS0095593Slightly white alabastrum(diploid) 2171.710
CNS0095594Slightly white alabastrum(diploid) 3150.428
CNS0095595Whole white alabastrum(diploid) 2179.029
CNS0095596Whole white alabastrum(diploid) 3198.363
CNS0095597Whole white alabastrum(diploid) 4155.889
CNS0095598Silvery flower (diploied) 1202.821
CNS0095599Silvery flower (diploied) 2202.080
CNS0095600Silvery flower (diploied) 3140.218
CNS0095601Golden flower (diploid) 1193.781
CNS0095602Golden flower (diploid) 2161.348
CNS0095603Golden flower (diploid) 3161.003
CNS0095604Slightly white alabastrum(tetraploid) 1252.050
CNS0095605Slightly white alabastrum(tetraploid) 2210.472
CNS0095606Slightly white alabastrum(tetraploid) 3454.726
CNS0095607Whole white alabastrum(tetraploid) 1121.335
CNS0095608Whole white alabastrum(tetraploid) 2114.809
CNS0095609Whole white alabastrum(tetraploid) 3499.835
CNS0095610Silvery flower (tetraploid) 1174.018
CNS0095611Silvery flower (tetraploid) 2207.259
CNS0095612Silvery flower (tetraploid) 324.322
CNS0095613Golden flower (tetraploid) 197.742
CNS0095614Golden flower (tetraploid) 2162.636
CNS0095615Golden flower (tetraploid) 357.928
CRA001975CRR073297Stem 1186.477
CRR073298Stem 2194.597
CRR073299Stem 3270.379
CRR073300Leaf 1175.362
CRR073301Leaf 2176.688
CRR073302Leaf 3215.458
CRR073303Juvenile bud 1165.686
CRR073304Juvenile bud 2151.164
CRR073305Juvenile bud 3147.116
CRR073306Third green 18.910
CRR073307Third green 26.766
CRR073308Third green 310.791
CRR073309Second white 11.476
CRR073310Second white 23.305
CRR073311Second white 31.523
CRR073312Silver flowering 11.893
CRR073313Silver flowering 22.922
CRR073314Silver flowering 31.810
CRR073315Gold flowering 1498.537
CRR073316Gold flowering 2488.558
CRR073317Gold flowering 3612.331
CRR073318Tawny withering 174.584
CRR073319Tawny withering 242.176
CRR073320Tawny withering 364.556