Gene detail

Detail information of GWHGAAZE030633

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12294.1	3.842E-145	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8LFV3\|CDF3_ARATH	6E-78	Cyclic dof factor 3
trEMBL	tr\|A0A068UVL6\|A0A068UVL6_COFCA	1E-145	Coffea canephora DH200=94 genomic scaffold, scaffold_63 {ECO:0000313\|EMBL:CDP12294.1}
TAIR10	AT3G47500.1	3E-67	cycling DOF factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46474856	46476321	+
GWHAAZE00000009	mRNA	46474856	46476321	+
GWHAAZE00000009	exon	46474856	46475086	+
GWHAAZE00000009	exon	46475209	46476321	+
GWHAAZE00000009	CDS	46474856	46475086	+
GWHAAZE00000009	CDS	46475209	46476321	+

Transcript Sequence
>GWHTAAZE030667 ATGATGGAAGTGCAGGACACGGTAATCAAACTGTTTGGGAAGAAGATTACCCTGCCGGAGAACGGGAAGATCACTGTAGTCTCAGGCGCTGACTATGCTCGAGAATCTGGTGCCACTGTTGATCATAAGAATTCTACTTCTCATCAAGATTGTATTTTGATAAAGATGTATAGCTCTTGTTTGGAAGACAAGAAAGTGGACAGAGTAGGGGAAGAACAGCCTCATAAGAAGGAACATCTAGCAGAAGAATCTACAAACTCAAAACCCTTACCGGATTCTGTTGTTGAAGAAATTGCAGCACTAGAACATCCAAAGTCGGAAAATAATCAGAGTGATGCAACAAACTCGGAAAAGAAAACCCTCAAGAAGCCCGACAAAATTCTTCCATGCCCGCGTTGTAACAGCATGGAAACAAAGTTCTGTTACTACAACAATTACAACGTTAATCAACCGCGTCATTTCTGTAAGAGCTGTCAAAGATACTGGACTAGCGGGGGTACCATGAGGAACATGCCTATAGGAGCTGGTCGTCGCAAAAACAAGAACCACACGGCCTCATTTTGTCTTCCTAATCATACTCATAATGAAATTCTTCGCCCTAATTTTCAACCCAATGGCAGAGTCCTCTCTTTTAACTCGGGTGAGTCTATGGCTTGTGATTTAAGCCTGGGTGAGAAAAAGTCACCGAATAGTACCCAAAATGGGATTTATAATCTCGACCAAGGAATCGTCGCTTGCAAAGGGGAAGAAAATGGAAATGATTACTCCATTAGATCTTCTATCGCAGATTCCAATTCAATGGTGGGCAGGGCAAGAAATGGAATTATACATAATATTCACGAGTTTCCTCCTCAATTTCCGTGTCTTCATGGGGTTCCGTGGCCTTATCCTTGGAATTCTACTATACCCATTTCGGGAATTCCAAATCCAGTTTACCCTGCACCTTATTGGAATTGTAATGTCCTAGGTGCTTGGAGTAATCCTTGGTTATCTCCACCGTGTACATCAAATCAAGTCGTCCCTAACTCTGGTTTCAGTTCATCAGCTCTACGAAAGCATTCAAGAAATGGAGACTTGCTTAATCGAAGCAATCCCAAGATGGAAGAGAAAACTTGTGAGAGGCCTATTTTGGTACCGCAAACATTAAGAATCAACGACCCTGATGAAGCTGCAAAGAGTTCTATATGGAAAACACTTGGGATCAAGAAGGATTCCACGTGTAGGGGAGGGTTTTTCCAAGCAAAGGTTGATGGAAAGAAGCATGAAATTGCAGCAGTCTCTCCAGTTTTACAGGCTAACCCTGCAGCTATGTCTAGGTTCCTCAGCTTCCAAGAGAGAGCCTAA

Network for GWHGAAZE030633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	125	182	2.30E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.241
	SRR3591706	second leaf	1.141
	SRR3591707	mature leaf	12.585
	SRR3591708	Shoot apex	0.256
	SRR3591709	Stem	0.180
	SRR3591710	White floral bud	7.096
	SRR3591711	White flower	8.610
	SRR3591712	Green floral bud	3.351
	SRR3591713	Yellow flower	6.299
SRP173429	SRR8316895	Juvenile bud stage	2.308
	SRR8316896	Juvenile bud stage	3.000
	SRR8316897	Juvenile bud stage	1.303
	SRR8316894	Third green stage	1.550
	SRR8316900	Third green stage	4.178
	SRR8316901	Third green stage	3.185
	SRR8316898	Complete white stage	2.355
	SRR8316899	Complete white stage	2.798
	SRR8316903	Complete white stage	6.288
	SRR8316902	Silver flowering stage	5.244
	SRR8316904	Silver flowering stage	10.250
	SRR8316905	Silver flowering stage	5.438
	SRR8316906	Gold flowering stage	23.045
	SRR8316907	Gold flowering stage	19.917
	SRR8316908	Gold flowering stage	20.068
SRP132670	SRR6706286	Control	5.036
	SRR6706287	Light intensity 50%	5.333
	SRR6706288	Light intensity 20%	6.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.553
	CNS0095593	Slightly white alabastrum(diploid) 2	1.200
	CNS0095594	Slightly white alabastrum(diploid) 3	0.485
	CNS0095595	Whole white alabastrum(diploid) 2	1.165
	CNS0095596	Whole white alabastrum(diploid) 3	1.494
	CNS0095597	Whole white alabastrum(diploid) 4	1.088
	CNS0095598	Silvery flower (diploied) 1	1.301
	CNS0095599	Silvery flower (diploied) 2	1.858
	CNS0095600	Silvery flower (diploied) 3	2.373
	CNS0095601	Golden flower (diploid) 1	1.353
	CNS0095602	Golden flower (diploid) 2	2.495
	CNS0095603	Golden flower (diploid) 3	2.856
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.501
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.774
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.451
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.413
	CNS0095610	Silvery flower (tetraploid) 1	2.715
	CNS0095611	Silvery flower (tetraploid) 2	2.649
	CNS0095612	Silvery flower (tetraploid) 3	2.038
	CNS0095613	Golden flower (tetraploid) 1	3.149
	CNS0095614	Golden flower (tetraploid) 2	4.600
	CNS0095615	Golden flower (tetraploid) 3	44.512
CRA001975	CRR073297	Stem 1	1.003
	CRR073298	Stem 2	1.734
	CRR073299	Stem 3	0.159
	CRR073300	Leaf 1	2.073
	CRR073301	Leaf 2	1.468
	CRR073302	Leaf 3	1.010
	CRR073303	Juvenile bud 1	0.376
	CRR073304	Juvenile bud 2	0.619
	CRR073305	Juvenile bud 3	0.216
	CRR073306	Third green 1	22.193
	CRR073307	Third green 2	8.933
	CRR073308	Third green 3	9.857
	CRR073309	Second white 1	12.446
	CRR073310	Second white 2	24.069
	CRR073311	Second white 3	29.633
	CRR073312	Silver flowering 1	14.010
	CRR073313	Silver flowering 2	7.196
	CRR073314	Silver flowering 3	6.093
	CRR073315	Gold flowering 1	0.050
	CRR073316	Gold flowering 2	0.357
	CRR073317	Gold flowering 3	0.199
	CRR073318	Tawny withering 1	0.122
	CRR073319	Tawny withering 2	0.695
	CRR073320	Tawny withering 3	0.283