Detail information of GWHGAAZE030635


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284856.17.9082E-168PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis vinifera]
Swissprottr|Q9SQL2|CB24_PEA4E-161Chlorophyll a-b binding protein P4, chloroplastic (Precursor)
trEMBLtr|A5AEI0|A5AEI0_VITVI3E-168Putative uncharacterized protein {ECO:0000313|EMBL:CAN79984.1}
TAIR10AT3G47470.11E-121light-harvesting chlorophyll-protein complex I subunit A4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4649695346497956-
GWHAAZE00000009mRNA4649695346497956-
GWHAAZE00000009exon4649695346497086-
GWHAAZE00000009exon4649718146497596-
GWHAAZE00000009exon4649775146497956-
GWHAAZE00000009CDS4649775146497956-
GWHAAZE00000009CDS4649718146497596-
GWHAAZE00000009CDS4649695346497086-
Transcript Sequence

Network for GWHGAAZE030635

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind632225.60E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08910LHCA4 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1266.773
SRR3591706second leaf5929.845
SRR3591707mature leaf5712.653
SRR3591708Shoot apex3322.865
SRR3591709Stem1052.443
SRR3591710White floral bud195.612
SRR3591711White flower221.142
SRR3591712Green floral bud165.521
SRR3591713Yellow flower114.008
SRP173429 SRR8316895Juvenile bud stage 489.766
SRR8316896Juvenile bud stage 500.671
SRR8316897Juvenile bud stage 265.397
SRR8316894Third green stage 185.280
SRR8316900Third green stage 425.579
SRR8316901Third green stage 263.672
SRR8316898Complete white stage 105.200
SRR8316899Complete white stage 199.015
SRR8316903Complete white stage 169.849
SRR8316902Silver flowering stage86.565
SRR8316904Silver flowering stage123.968
SRR8316905Silver flowering stage62.516
SRR8316906Gold flowering stage 205.188
SRR8316907Gold flowering stage 197.411
SRR8316908Gold flowering stage 163.316
SRP132670SRR6706286Control514.543
SRR6706287Light intensity 50%313.600
SRR6706288Light intensity 20%296.188
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1419.885
CNS0095593Slightly white alabastrum(diploid) 2336.563
CNS0095594Slightly white alabastrum(diploid) 3299.141
CNS0095595Whole white alabastrum(diploid) 2219.223
CNS0095596Whole white alabastrum(diploid) 3281.964
CNS0095597Whole white alabastrum(diploid) 4152.354
CNS0095598Silvery flower (diploied) 1648.052
CNS0095599Silvery flower (diploied) 2544.333
CNS0095600Silvery flower (diploied) 3576.471
CNS0095601Golden flower (diploid) 1715.748
CNS0095602Golden flower (diploid) 2776.918
CNS0095603Golden flower (diploid) 3746.168
CNS0095604Slightly white alabastrum(tetraploid) 1594.050
CNS0095605Slightly white alabastrum(tetraploid) 2700.215
CNS0095606Slightly white alabastrum(tetraploid) 31010.333
CNS0095607Whole white alabastrum(tetraploid) 1342.231
CNS0095608Whole white alabastrum(tetraploid) 2207.785
CNS0095609Whole white alabastrum(tetraploid) 3405.158
CNS0095610Silvery flower (tetraploid) 1669.293
CNS0095611Silvery flower (tetraploid) 21327.422
CNS0095612Silvery flower (tetraploid) 3113.643
CNS0095613Golden flower (tetraploid) 1257.015
CNS0095614Golden flower (tetraploid) 2536.058
CNS0095615Golden flower (tetraploid) 3234.846
CRA001975CRR073297Stem 1299.306
CRR073298Stem 2248.476
CRR073299Stem 3466.070
CRR073300Leaf 160.497
CRR073301Leaf 278.727
CRR073302Leaf 383.397
CRR073303Juvenile bud 143.690
CRR073304Juvenile bud 215.468
CRR073305Juvenile bud 360.895
CRR073306Third green 12.921
CRR073307Third green 21.629
CRR073308Third green 37.875
CRR073309Second white 17.790
CRR073310Second white 24.692
CRR073311Second white 33.655
CRR073312Silver flowering 13.886
CRR073313Silver flowering 24.630
CRR073314Silver flowering 36.230
CRR073315Gold flowering 12043.630
CRR073316Gold flowering 21833.947
CRR073317Gold flowering 32514.259
CRR073318Tawny withering 1154.982
CRR073319Tawny withering 274.566
CRR073320Tawny withering 3134.352