Detail information of GWHGAAZE030639


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244198.11.05584E-31PREDICTED: F-box/kelch-repeat protein At1g57790-like [Nelumbo nucifera]
Swissprottr|Q1G391|FB217_ARATH0.000000004F-box protein At4g00893
trEMBLtr|I3SWK4|I3SWK4_MEDTR1E-15Uncharacterized protein {ECO:0000313|EMBL:AFK44646.1}
TAIR10AT4G00893.10.00000001Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4653686946537984-
GWHAAZE00000009mRNA4653686946537984-
GWHAAZE00000009exon4653686946537984-
GWHAAZE00000009CDS4653686946537984-
Transcript Sequence

Network for GWHGAAZE030639

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.993
SRR3591706second leaf7.978
SRR3591707mature leaf10.628
SRR3591708Shoot apex10.524
SRR3591709Stem6.254
SRR3591710White floral bud7.233
SRR3591711White flower11.905
SRR3591712Green floral bud7.952
SRR3591713Yellow flower8.496
SRP173429 SRR8316895Juvenile bud stage 5.605
SRR8316896Juvenile bud stage 6.407
SRR8316897Juvenile bud stage 4.646
SRR8316894Third green stage 3.712
SRR8316900Third green stage 5.814
SRR8316901Third green stage 5.780
SRR8316898Complete white stage 1.012
SRR8316899Complete white stage 4.495
SRR8316903Complete white stage 2.409
SRR8316902Silver flowering stage0.734
SRR8316904Silver flowering stage3.293
SRR8316905Silver flowering stage0.778
SRR8316906Gold flowering stage 3.521
SRR8316907Gold flowering stage 3.477
SRR8316908Gold flowering stage 4.464
SRP132670SRR6706286Control7.443
SRR6706287Light intensity 50%8.777
SRR6706288Light intensity 20%8.477
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.566
CNS0095593Slightly white alabastrum(diploid) 24.608
CNS0095594Slightly white alabastrum(diploid) 33.618
CNS0095595Whole white alabastrum(diploid) 22.672
CNS0095596Whole white alabastrum(diploid) 33.418
CNS0095597Whole white alabastrum(diploid) 42.005
CNS0095598Silvery flower (diploied) 17.831
CNS0095599Silvery flower (diploied) 25.245
CNS0095600Silvery flower (diploied) 311.547
CNS0095601Golden flower (diploid) 16.949
CNS0095602Golden flower (diploid) 213.020
CNS0095603Golden flower (diploid) 311.158
CNS0095604Slightly white alabastrum(tetraploid) 17.217
CNS0095605Slightly white alabastrum(tetraploid) 24.043
CNS0095606Slightly white alabastrum(tetraploid) 314.701
CNS0095607Whole white alabastrum(tetraploid) 12.348
CNS0095608Whole white alabastrum(tetraploid) 23.392
CNS0095609Whole white alabastrum(tetraploid) 39.851
CNS0095610Silvery flower (tetraploid) 111.762
CNS0095611Silvery flower (tetraploid) 212.565
CNS0095612Silvery flower (tetraploid) 37.425
CNS0095613Golden flower (tetraploid) 15.900
CNS0095614Golden flower (tetraploid) 212.280
CNS0095615Golden flower (tetraploid) 37.795
CRA001975CRR073297Stem 18.932
CRR073298Stem 210.197
CRR073299Stem 37.432
CRR073300Leaf 111.239
CRR073301Leaf 27.946
CRR073302Leaf 36.594
CRR073303Juvenile bud 17.245
CRR073304Juvenile bud 26.587
CRR073305Juvenile bud 39.673
CRR073306Third green 11.156
CRR073307Third green 21.303
CRR073308Third green 31.290
CRR073309Second white 12.349
CRR073310Second white 22.245
CRR073311Second white 32.324
CRR073312Silver flowering 11.996
CRR073313Silver flowering 20.474
CRR073314Silver flowering 30.632
CRR073315Gold flowering 16.431
CRR073316Gold flowering 26.598
CRR073317Gold flowering 38.865
CRR073318Tawny withering 15.494
CRR073319Tawny withering 25.364
CRR073320Tawny withering 34.198